BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1899.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring pro...   378   e-106
gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring pro...    83   1e-17

>gi|300311355|ref|YP_003775447.1| flagellar basal-body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 219

 Score =  378 bits (970), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/219 (92%), Positives = 210/219 (95%)

Query: 1   MKNTLKLATIAGVLAVTGCTTVPDSIVTGPKTARPQPASYAPPTSGAIFQSAVYRPLLED 60
           MK+ LK  T+AG+LAV GCTTVPDSIV GPK+ARPQPASYAPPTSGAIFQ AVYRPLLED
Sbjct: 1   MKSMLKWVTLAGILAVAGCTTVPDSIVAGPKSARPQPASYAPPTSGAIFQGAVYRPLLED 60

Query: 61  RRARLVGDTLTIVINEKTSAGKSAASSASKTGAVASPAPTIFGTSIKELSANGSSSAKFD 120
           RRARLVGDTLTIVINEKTSAGKSAASSASKTGAV SP PT FGTSIKEL+ANGSSSAKFD
Sbjct: 61  RRARLVGDTLTIVINEKTSAGKSAASSASKTGAVNSPVPTFFGTSIKELTANGSSSAKFD 120

Query: 121 DKGATTSSNTFTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNIQTGN 180
           DKGATTSSNTFTGTIGVTVVEVLPNGNLVV+GEKQVALDKGVEYVRFSGTVSPDNIQTGN
Sbjct: 121 DKGATTSSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGN 180

Query: 181 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 219
           TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFS+SPF
Sbjct: 181 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSISPF 219


>gi|300314024|ref|YP_003778116.1| flagellar basal body L-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 221

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 108/194 (55%), Gaps = 8/194 (4%)

Query: 6   KLATIAGVLAVTGCTTVPDSIVTGPKTARPQPASYAPPTSGAIFQSAVYRPLLEDRRARL 65
           +LA    + A+      P  +V GP + RP         +GAIF+ +  + L E+  A  
Sbjct: 6   RLAGACTLAALLSACNSPAPMVIGPTSVRPAYQVANVENNGAIFRVSSAQ-LFEEPTAYN 64

Query: 66  VGDTLTIVINEKTSAGKSAASSASKTGAVASPAPT----IFGTSIKELSANGSSSAK--F 119
           VGD + I I+E  S+   AA++ S+  ++    P     + G   +   AN S+S    F
Sbjct: 65  VGDIIKIDISESISSSNKAATNNSRDSSLTQKGPGSGAPLGGLFTQLYDANYSASGNNTF 124

Query: 120 DDKGATTSSNTFTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNIQTG 179
              G ++++NT +GT+ V++VEVLPN NLVV+GEK++ ++  +  +RFSG V   +I+ G
Sbjct: 125 KGSGDSSNTNTMSGTLMVSIVEVLPNRNLVVAGEKRIGVNGNINTLRFSGVVRTRDIR-G 183

Query: 180 NTVSSTLVADAKVE 193
             V+S+ VADA++E
Sbjct: 184 GIVASSNVADARLE 197


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.126    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 577,676
Number of extensions: 20780
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)