BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1897.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311353|ref|YP_003775445.1| flagellar basal body rod protei...   468   e-133
gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protei...    91   1e-19

>gi|300311353|ref|YP_003775445.1| flagellar basal body rod protein
           FlgF [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  468 bits (1204), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/245 (93%), Positives = 241/245 (98%)

Query: 1   MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGEGLPTRAFVVDS 60
           MDRLVYTAMSGAKHTLEQQA+ASNNLANATTTGFRAQLNTFR+APVVG+GLPTR FVVDS
Sbjct: 1   MDRLVYTAMSGAKHTLEQQATASNNLANATTTGFRAQLNTFRAAPVVGDGLPTRTFVVDS 60

Query: 61  TAGSDFSQGPIQDTGRALDVAVQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120
           TAG+DFSQGPIQDTGRALDVA+QGRGWIAVQTADGGEAYTRNGSFKINENGILQTQ+GQ+
Sbjct: 61  TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSGQT 120

Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLQRGDDGLF 180
           V GDGGPITIPPD TVAIAADGTVS+IPTNGIPNAVNVLGRIKLVNPDEKN++RGDDGLF
Sbjct: 121 VLGDGGPITIPPDATVAIAADGTVSAIPTNGIPNAVNVLGRIKLVNPDEKNMKRGDDGLF 180

Query: 181 RTITGAAQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAEGDASKATS 240
           RTITGAAQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMK+IQTAE DA+KATS
Sbjct: 181 RTITGAAQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTAESDATKATS 240

Query: 241 ILSLS 245
           ILSLS
Sbjct: 241 ILSLS 245


>gi|300311354|ref|YP_003775446.1| flagellar basal-body rod protein
           FlgG [Herbaspirillum seropedicae SmR1]
          Length = 260

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 121/267 (45%), Gaps = 33/267 (12%)

Query: 1   MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPV-------------- 46
           M R ++ + +G      Q    SNNLAN +T GF+     F                   
Sbjct: 1   MIRSLWISKTGLDAQQTQLDVISNNLANVSTNGFKRSRAVFEDLLYQTVRQPGAQSSQQT 60

Query: 47  -VGEGLPTRAFVVDSTAGSDFSQGPIQDTGRALDVAVQGRGWIAVQTADGGEAYTRNGSF 105
            +  GL     V        F+QG +  T    D+A+QG G+  +   DG  AYTR+G+F
Sbjct: 61  QLPSGLQIGTGVRPVATERIFTQGNVNQTNNDKDLAIQGNGFFQILLPDGTTAYTRDGAF 120

Query: 106 KINENGILQTQNGQSVQGDGGPITIPPDTT-VAIAADGTVSSIPTNGIPNAVNVLGRIK- 163
           + +  G L T +G ++Q    PIT+P +TT + +  DG VS +       A   +G I+ 
Sbjct: 121 QTDSQGQLVTSSGYTLQ---PPITVPLNTTKLTVGRDGVVSIMQAGS--TATTQIGTIQV 175

Query: 164 --LVNPDEKNLQRGDDGLFRTITGAAQPDANV-------RLASGALEGSNVNVVEAMVNM 214
              +NP    L+   + L+     +  P+ N         L  G +E SNVNVVE +VNM
Sbjct: 176 ATFINP--AGLESRGENLYMETAASGAPNPNNPGTNGAGALWQGYVETSNVNVVEELVNM 233

Query: 215 INLSRQFEMNMKVIQTAEGDASKATSI 241
           I   R +E+N K I T++   +K + +
Sbjct: 234 IQTQRAYEINSKAITTSDQMLAKLSQL 260


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 721,654
Number of extensions: 31445
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 3
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)