BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1892.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring for...   395   e-111

>gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring
           formation protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  395 bits (1016), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/254 (78%), Positives = 224/254 (88%)

Query: 1   LCPHRQVAQMKHLLRALRPALAALLLLCGSLGQFSPALAQNDPNTPQKQDLQVVQQVAEQ 60
           + P  ++ +MKH LR LR A AAL LL G L   SPA AQNDP  PQ+QDLQ+VQQ AEQ
Sbjct: 1   MSPWDKLLKMKHPLRVLRHACAALALLAGGLLALSPASAQNDPTAPQRQDLQIVQQTAEQ 60

Query: 61  FLKSQTSGLPGSVTVTIDPADPRLTLASCLEPQAFMPNGGRLFGRTTVGVKCIAPSPWTI 120
           FLK+QT+GLPGS+T+  DP D R+ L +CL+PQAFMPNG RL+GRT+VGVKC+AP+PWTI
Sbjct: 61  FLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTI 120

Query: 121 YLRANVQVISDYLVAAVPLAQGQTISASDITRIRGDMSALPSGVLTEESQAIGRVANMSL 180
           Y+RANVQVISDYL+AAVPLAQGQTISASDI+R+RGDMSALP+GV+TEESQ IGRVA MSL
Sbjct: 121 YVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSL 180

Query: 181 RAGTPLRMDTIRNQRVVQQGQPVRVVSNGPGFQISTEARALTNANEGQMAQARTAAGQVV 240
           RAGTPLRMD IRNQRVVQQGQ VRVVSNGPGFQISTEARAL+NANEGQM QARTAAGQVV
Sbjct: 181 RAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVV 240

Query: 241 SGIAKAGGILEINY 254
           SGIAKAGGILEINY
Sbjct: 241 SGIAKAGGILEINY 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 679,431
Number of extensions: 25286
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)