BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1887.p
         (493 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-bind...   871   0.0  

>gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/498 (90%), Positives = 456/498 (91%), Gaps = 9/498 (1%)

Query: 1   MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60
           MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP
Sbjct: 1   MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60

Query: 61  NARPPAASLQQQSGQPAAQQPKRPALLSSPVAQQPVRAARAENAPLLDQPAQGRAPARAA 120
           + RP AASLQQQSG P AQQP+RPALLSSP AQ   R AR E APLLDQP   R+ ARA 
Sbjct: 61  SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQ--ARPAR-EGAPLLDQPGSERSQARAE 117

Query: 121 EPAATGDARVWRSRRVEQA-----ARPASGAAHESGQADQRPRSALPEFDGKDYDEILSE 175
             A   DARVWRSR  +       A   +GA     Q   RPRSALPEFDGKDYDEILSE
Sbjct: 118 A-APAADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSE 176

Query: 176 VMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSK 235
           VMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSK
Sbjct: 177 VMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSK 236

Query: 236 SQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRHGSG 295
           SQDIMFWVKSVLARNLNTLANENELLENGGVFA+VGPTGVGKTTTTAKLAARCVMRHGSG
Sbjct: 237 SQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSG 296

Query: 296 KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ 355
           KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ
Sbjct: 297 KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ 356

Query: 356 RDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI 415
           RDQMVAEQDAML GAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI
Sbjct: 357 RDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI 416

Query: 416 GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI 475
           GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI
Sbjct: 417 GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI 476

Query: 476 GPTAMSMNDKGLREVSFG 493
           GPTAMSMNDKGLREVSFG
Sbjct: 477 GPTAMSMNDKGLREVSFG 494


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,296,091
Number of extensions: 48508
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 2
Length of query: 493
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,198,455
Effective search space: 484175820
Effective search space used: 484175820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)