BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1884.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ [He...   387   e-109
gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase [Herbasp...   148   4e-37

>gi|300311340|ref|YP_003775432.1| chemotaxis phosphatase CheZ
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  387 bits (993), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/216 (87%), Positives = 202/216 (93%)

Query: 1   VDSAPNPARTSSVEGSGVSEEVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRL 60
           +D+  NP R  + EG+GVSEEVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRL
Sbjct: 1   MDNGVNPVRNPAAEGAGVSEEVLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRL 60

Query: 61  EYVARMTEQAAQRVLNATELASPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTS 120
           EYVARMTEQAAQRVLNATELASPLQ+RI +GA++LKAQWDAA+AGSFSEA  R LAA+TS
Sbjct: 61  EYVARMTEQAAQRVLNATELASPLQDRISEGATDLKAQWDAATAGSFSEAHCRELAARTS 120

Query: 121 AFLAQAGEDSSVTKQQLLDIMMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSET 180
           +FLAQA EDSSVTKQQLLDIMMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDY+PSE 
Sbjct: 121 SFLAQASEDSSVTKQQLLDIMMAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYAPSEA 180

Query: 181 KREDGGLLNGPQIDPAGKDVIANQGQVDDLLESLGF 216
           KRED GLLNGPQIDP GKDVIANQGQVDDLLESLGF
Sbjct: 181 KREDTGLLNGPQIDPTGKDVIANQGQVDDLLESLGF 216


>gi|300312395|ref|YP_003776487.1| chemotaxis phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  148 bits (373), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 119/200 (59%), Gaps = 9/200 (4%)

Query: 22  VLVRIGHMTRNLHDSLRGLGFDRLLEKAASDMPDARDRLEYVARMTEQAAQRVLNATELA 81
           +  R+G + R LHDS+R LG+DR L   AS + DA+ RLE++A +TEQAA +VLNA +  
Sbjct: 51  MYARLGGIVRLLHDSMRELGYDRSLNDVASQIGDAQSRLEHIATLTEQAANKVLNALDSG 110

Query: 82  SPLQERIHDGASELKAQWDAASAGSFSEADYRALAAKTSAFLAQAGEDSSVTKQQLLDIM 141
            P Q+R+ + A ++  +W    AG  S  +++ LA  +  F A   E +   K ++L+IM
Sbjct: 111 MPAQDRLQEQAKDINDRWSRLYAGQMSIDEFKQLAGDSQKFSAAVVESTEAEKARMLEIM 170

Query: 142 MAQDFQDLTGQVIKRVTKLAHDLESQLVQLLVDYSPSETK-----REDGGLLNGPQIDPA 196
           MAQDFQD+TGQ+IK++  +    E +L QLL D +P E +      +   L+NG    PA
Sbjct: 171 MAQDFQDITGQLIKKIVGITTTAERELAQLLRDNAPPEVRAQIEAEKPVSLMNG----PA 226

Query: 197 GKDVIANQGQVDDLLESLGF 216
                  Q  VDDLL+SLGF
Sbjct: 227 SPGTAMGQTDVDDLLDSLGF 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.129    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 609,342
Number of extensions: 22593
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)