BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1879.p (565 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis pro... 904 0.0 gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I p... 104 2e-23 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 103 4e-23 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 100 5e-22 gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sen... 99 7e-22 >gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 553 Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/549 (82%), Positives = 487/549 (88%) Query: 1 MAKSRGAGATGAAWGAWRGVLPWVVGLVLGGGAAVVLDMVAAGQWLGAPGVSCVAVLLGM 60 MA +R AGATG R V PW+ GL++G A + LD + AGQWL P + + VLLGM Sbjct: 1 MAVTRAAGATGKLMQCVRAVGPWLAGLLVGSLAGLALDALGAGQWLPGPVIHALGVLLGM 60 Query: 61 IGFALARRGEQSQAGPLVDKISGEIDHIMIGAAETSFFVDTIKTKIGKDVVAAERIATSA 120 FA R+ Q Q LVD+ISGEIDHIMIGAAETSFFVDTIKTK+ KDV AA RIA SA Sbjct: 61 AVFAPLRQRSQPQGNQLVDRISGEIDHIMIGAAETSFFVDTIKTKLSKDVDAANRIAASA 120 Query: 121 EQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALSASSMMAQLQ 180 EQNAATT+QIAANAERASSIA+EVR+ESVSGR+EVDRGLQQIGQARTDALSASSMMAQLQ Sbjct: 121 EQNAATTQQIAANAERASSIASEVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQ 180 Query: 181 EKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATD 240 EKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATD Sbjct: 181 EKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATD 240 Query: 241 DIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIAL 300 DIG MVRAI+EEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIA+ Sbjct: 241 DIGTMVRAITEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIAV 300 Query: 301 ASREHVQTTQEIAEAITDIRNGMLHTDAELPRVAASAMELSERAEVVFEAIIDGGAHSGH 360 ASREHVQTTQEIA+AITDIRNGML TD ELPRVAASAM+LSERAE VFEAI++GGA GH Sbjct: 301 ASREHVQTTQEIADAITDIRNGMLQTDTELPRVAASAMQLSERAEAVFEAIVEGGARGGH 360 Query: 361 DEIRGAAVEAAQAVGKLFEGAIRAGQITEAALFDRSYTPIPHTSPQKHSSQFDGFTDRVL 420 D+IR AA +AA AVGKLFE +IRAG ITEAALFDR Y PIP+TSPQKHSSQFD FTDRVL Sbjct: 361 DDIRIAAADAAAAVGKLFEESIRAGVITEAALFDRHYKPIPNTSPQKHSSQFDAFTDRVL 420 Query: 421 PALQEGLLERMPQLAYAGAVDNNGYFPTHNKKFSQPLTGDYDVDLVNNRTKRIFSDRTGK 480 PA+QE LLERMPQLAYAGAVDNNGYFPTHNKKFSQPLTG+YDVDLVNNRTKRIFSDRTGK Sbjct: 421 PAIQEALLERMPQLAYAGAVDNNGYFPTHNKKFSQPLTGNYDVDLVNNRTKRIFSDRTGK 480 Query: 481 RCGANTKPFLLQTYRRDTGEVMHDLSVPIYVNGKHWGGFRVGYRSSHVPAAAPVAAAAPA 540 RCG+NTKPFLLQTY+RDTGEVMHDLSVPI+V+GKHWGGFRVGYRSSH PA A AP Sbjct: 481 RCGSNTKPFLLQTYKRDTGEVMHDLSVPIHVHGKHWGGFRVGYRSSHAPAPAVATTPAPV 540 Query: 541 PTPARTATR 549 P+PA+ + R Sbjct: 541 PSPAKVSVR 549 >gi|300311974|ref|YP_003776066.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 25/240 (10%) Query: 114 ERIATSAEQNAATTEQIAANAERASSIA--AEVRSESVSGRAEVDRGLQQIGQARTDALS 171 E+ A+S EQ A+ E+IAA A++++ A A + SG A Q GQ D + Sbjct: 291 EQAASSLEQTASAMEEIAATAQQSAEFARSANAQVAQASGVA------QHGGQVMGDVVQ 344 Query: 172 ASSMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQL 231 M ++ E SRRI I VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR L Sbjct: 345 T---MGRIDESSRRIADIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTL 401 Query: 232 AQRTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQS 291 AQR+ A +I ++ A + S + + + QNVE V G ++ I +A + Sbjct: 402 AQRSATAAREIKELINASLAAVDGGMSLVGDAGKIIQDVVQNVELVRGTISEISVAAEEQ 461 Query: 292 QEQIEEIALASREHVQTTQEIAEAITDIRNGMLHTDAELPRVAASAMELSERAEVVFEAI 351 I E+ +A QTTQ+ A + + A+ M+L+++A ++ E I Sbjct: 462 SRGIAEVNIAISNMEQTTQQNASLV--------------EQTTAATMQLNQQAVLLAEVI 507 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 132/244 (54%), Gaps = 27/244 (11%) Query: 111 VAAERIATSAEQNAATTEQIAANAERASSIA--AEVRSESVSGRAEVDRGLQQIGQARTD 168 V E A S EQ AA+ +I+A +R+++ A A+ RS + +G A Q G+ +D Sbjct: 372 VRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIAS------QGGKVVSD 425 Query: 169 ALSASSMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEV 228 A++ M ++++ S +I I VI IA +TN+LALNAA+E+ARAGEQGRGFAVVA EV Sbjct: 426 AVAT---MGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVVAHEV 482 Query: 229 RQLAQRTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSA 288 R LAQR+ A ++ +V A SRV +Q V + G + I Sbjct: 483 RNLAQRSAGAAREVKDLVEAT--------------ISRVAAGSQQVRQAGGTMRDIVTHT 528 Query: 289 SQSQEQIEEIALASREHVQTTQEIAEAITDIRNGMLHTDAEL-PRVAASAMELSERAEVV 347 Q I +IA + E + QE+ +A+ + +GM+ +A L AA++ L ++A V+ Sbjct: 529 DDVQSAIADIARTTTEQTRGIQEVNQAVIQL-DGMVQQNAALVEESAAASSTLQQQANVL 587 Query: 348 FEAI 351 I Sbjct: 588 AATI 591 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 99.8 bits (247), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 126/242 (52%), Gaps = 28/242 (11%) Query: 77 LVDKISGEIDHIMIGAAETSFFVDTIKTKIGKDVVAAERIATSAEQNAATTEQIAANAER 136 +V ++ G D I + E + + + + A E A++ E+ +T Q A NA + Sbjct: 266 IVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEETASAMEELTSTVSQNADNARQ 325 Query: 137 ASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEI 196 A+ +AA S + QQ G+ + +S M + E SR+I I VI I Sbjct: 326 ANQLAASASSVA-----------QQGGEVVSQVIST---MGSINESSRKIVDIISVIDGI 371 Query: 197 AARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQRTKEATDDIGVMVR-------AI 249 A +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQR+ A +I ++ + Sbjct: 372 AFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDDSVAKVGSG 431 Query: 250 SEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQEQIEEIALASREHVQTT 309 SE RA S M+ E +V +V +++ I ++S+ + I ++ LA + QTT Sbjct: 432 SELVTRAGSTMD-------EVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTT 484 Query: 310 QE 311 Q+ Sbjct: 485 QQ 486 >gi|300313877|ref|YP_003777969.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 539 Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 81/209 (38%), Positives = 117/209 (55%), Gaps = 28/209 (13%) Query: 114 ERIATSAEQNAATTEQIAANAERASSIAAEVRSESVSGRAEVDRGLQQIGQARTDALSAS 173 E A++ E+ +T Q A +A +A+ + A +V G A VD+ +Q +G+ RT Sbjct: 318 EETASAMEELTSTVRQNADHAHQANELVATSSRLAVQGGAVVDQVVQTMGEIRT------ 371 Query: 174 SMMAQLQEKSRRIHGITEVISEIAARTNLLALNAAIEAARAGEQGRGFAVVAGEVRQLAQ 233 S RI IT VI IA +TN+LALNAA+EAARAGEQGRGFAVVA EVR LAQ Sbjct: 372 --------GSARIADITGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQ 423 Query: 234 RTKEATDDIGVMVRAISEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERSASQSQE 293 R+ A +I ++ ++ A+G + V +A Q +H +++S+ R A+ Sbjct: 424 RSAAAAREIKALIEG---SVQQVATG----AELVDQAGQT---MHEIVDSVARVAT---- 469 Query: 294 QIEEIALASREHVQTTQEIAEAITDIRNG 322 + EIA+ASRE + EI A+T + G Sbjct: 470 LMSEIAVASREQSRGIDEINHAVTQMDEG 498 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.129 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,262,221 Number of extensions: 48579 Number of successful extensions: 421 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 70 Length of query: 565 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 475 Effective length of database: 1,193,720 Effective search space: 567017000 Effective search space used: 567017000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)