BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1870.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312414|ref|YP_003776506.1| hypothetical protein Hsero_3114...    63   1e-11

>gi|300312414|ref|YP_003776506.1| hypothetical protein Hsero_3114
           [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 63.2 bits (152), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 97/193 (50%), Gaps = 30/193 (15%)

Query: 1   MKKLLATAAVALS-LSMAGTAAYASVT---TLTLTDNTAGFSSSQSGA-----FNDTYNF 51
           MKKL+ +  +A + + MA TA+ A +    +L  TD T+ F++          F + + F
Sbjct: 1   MKKLIGSLLLASAFIGMASTASAADLERTRSLIWTDATSTFNARYGEGTTGLTFLENFTF 60

Query: 52  TISSLSDLSSSVTASIVTRSTTAPTTLTSFLLTNIASGATYASVSNTSVTNLAGVKTYVT 111
           T+ ++    SS   SI     +    + SF L+           +  ++T    ++    
Sbjct: 61  TVDAVGSAVSSAVVSIALDGLSR-LGIDSFTLSG----------NGRTITGTPLLEGDTQ 109

Query: 112 TYAIAASSLAAGMYKLTVTGR------GSYGGNLTLTSAVPEASTTSMMLGGLAFVGLMA 165
           T+++    L+ G+Y L+V G       GS+ GN+++ + VPEASTT+MMLGGL  +G  A
Sbjct: 110 TFSLRTDGLSTGLYTLSVAGTILGSEGGSFAGNISV-APVPEASTTAMMLGGLGIIGFAA 168

Query: 166 ARRRRK---DAQQ 175
            RRRRK   DA Q
Sbjct: 169 YRRRRKAGEDAPQ 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.119    0.305 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 366,879
Number of extensions: 11116
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)