BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1869.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase [Her...   273   4e-75
gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase [Her...    73   1e-14
gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase [Her...    64   9e-12

>gi|300311326|ref|YP_003775418.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  273 bits (699), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 131/168 (77%), Positives = 145/168 (86%)

Query: 1   MPQDPDWQADLARYNLPRPFLKEQSIWAIWVYRWGRRIEARPAGLMRKLQNTLYWPLFRL 60
           M +DPDW+ADL RY++ RPFLKEQSIWAIWVYRWGRRIEARPAGL RK+ N  YW  FRL
Sbjct: 1   MTRDPDWEADLRRYDMRRPFLKEQSIWAIWVYRWGRRIEARPAGLSRKIANLFYWLAFRL 60

Query: 61  TETAFGISLPRGARIGPGLRIWHFGNIFVNEQAVIGARCTLRQGVTIGNRHADGPSPVIG 120
            ET FGISLPR ARIGPGLRIWHFGNIF++   VIGA CTLRQGVTIGNR   GP PV+G
Sbjct: 61  VETVFGISLPRTARIGPGLRIWHFGNIFLHGDVVIGAGCTLRQGVTIGNRREGGPVPVLG 120

Query: 121 NDVELGAYAQVLGGIHLGDGCKIGAMSVVLHDVPPGATVVGAPARVVS 168
           ++VELGAYAQVLG +HLGDGCK+GAMSVVL DVPPGAT VGAPARV++
Sbjct: 121 DNVELGAYAQVLGAVHLGDGCKVGAMSVVLDDVPPGATAVGAPARVIA 168


>gi|300311189|ref|YP_003775281.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 16/130 (12%)

Query: 50  QNTLYWP---LFRLTETAFGISLPRGARIGPGLRIWHFGNIFVNEQAVIGARCTLRQGVT 106
           Q  L W    + +L     GI +  GA IG  + I H   + + E A++G   T+ QGVT
Sbjct: 46  QAQLKWLGRFISQLGRMLTGIEIHPGATIGRRVFIDHGMGVVIGETAIVGDDSTIYQGVT 105

Query: 107 IG--------NRHADGPSPVIGNDVELGAYAQVLGGIHLGDGCKIGAMSVVLHDVPPGAT 158
           +G         RH     P +G  V +GA A+VLGG  +GDG K+G+ +VV  +VP G T
Sbjct: 106 LGGTSLVKGAKRH-----PTLGRGVIIGAGAKVLGGFTVGDGAKVGSNAVVTKEVPAGTT 160

Query: 159 VVGAPARVVS 168
            VG PAR++ 
Sbjct: 161 AVGNPARIIE 170


>gi|300311650|ref|YP_003775742.1| serine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score = 63.5 bits (153), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 7   WQADLARYNLPRPFLKEQSIWAIWVYRWGRRIEARPAGLMRKLQNTLYWPLFRLTETAFG 66
           +Q D A  ++    L      A+  YR   R+      L+ ++       +  L   A G
Sbjct: 134 YQGDPAARSVDEVLLCYPGALAMIHYRLAHRLYQLGLPLLARI-------IAELAHAATG 186

Query: 67  ISLPRGARIGPGLRIWHFGNIFVNEQAVIGARCTLRQGVTIGNRH----ADGP------- 115
           I +  GA+IG G  I H   + + E AVIG    + Q VT+G +     ADG        
Sbjct: 187 IDIHPGAQIGTGFFIDHGTGVVIGETAVIGNNVRIYQAVTLGAKRFPTDADGKLEKGRAR 246

Query: 116 SPVIGNDVELGAYAQVLGGIHLGDGCKIGAMSVVLHDVPPGATVVGAPAR 165
            P++ +DV + A A +LG I LG G  IG    + HDVP GA +  A +R
Sbjct: 247 HPIVEDDVVIYAGATILGRIRLGRGAVIGGNVWLTHDVPAGAHISQAASR 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 670,754
Number of extensions: 30383
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 4
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)