BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1868.p
         (426 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310503|ref|YP_003774595.1| 3-deoxy-manno-octulosonate cyti...   166   3e-42
gi|300313256|ref|YP_003777348.1| low-specificity phosphatase [He...   116   3e-27

>gi|300310503|ref|YP_003774595.1| 3-deoxy-manno-octulosonate
           cytidylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 271

 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/275 (42%), Positives = 149/275 (54%), Gaps = 31/275 (11%)

Query: 1   MHCIAVIPARFGSSRLPGKPLADILGKPMIQHVYERVRSLDELADVVVATDDERIVAAVN 60
           M    +IPAR  S+RLP KPLAD+ GKPMI  V ER  +    A ++VATD   I AA  
Sbjct: 1   MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERA-AQSGAARIIVATDHHDIHAACQ 59

Query: 61  AFGGKALLTSPHHPSGTDRLREVMQHHPAD---LYLNVQGDEPLVNPTHLRSLLQAMLA- 116
           A G +  +T   HPSGTDR+ EV          + +NVQGDEPL++P     L+ A  A 
Sbjct: 60  AHGVEVAMTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDP----GLIAATAAH 115

Query: 117 -APQVQAGTLCHAI-TAGEAENPNTVKVVRNRAGDALYFSRARIPFERESSGKARY---- 170
             P V   T  HAI +A +A NPN VKVV N+ G A+YFSRA IP+ R++  ++R     
Sbjct: 116 IKPGVPMATAAHAIESAADAFNPNVVKVVLNKEGCAMYFSRATIPWHRDAFAQSREVLPD 175

Query: 171 ------------FKHIGVYAYRAELLAAFPGLPPSELEGAEMLEQLRIMDAGWQIRVIEV 218
                        +HIG+YAY    L  +P L PS +E  E LEQLR++  G  I V  V
Sbjct: 176 ASGPDHANEYVPLRHIGLYAYSNRFLQLYPTLSPSPVERIEALEQLRVLWHGHAIAV-HV 234

Query: 219 DHAAP--GVDTPACLERVRALMSGLPD-PALKTGS 250
               P  GVDTP  L RVR      PD P ++T S
Sbjct: 235 TSLLPEAGVDTPEDLLRVRKHFEAPPDSPLVQTIS 269


>gi|300313256|ref|YP_003777348.1| low-specificity phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 184

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 94/171 (54%), Gaps = 4/171 (2%)

Query: 236 ALMSGLPDPALKTGSLADVKLVITDIDGVLTDGGIWYDDSGECLKRFHVRDGMGIKMLQE 295
           +  S LP  AL+    A ++L+I D+DGVLTDGG++Y + GE  KRF+  DG GIK++Q+
Sbjct: 5   SFASTLPAAALEKA--AGIRLMIFDVDGVLTDGGLFYGEDGEAFKRFNALDGHGIKLMQQ 62

Query: 296 AGVNVAVISGRDSATLRRRLADLGIT-VFQLGAKDKAGACRAIMEQFQVGPEATAMIGDD 354
            G   A+I+ R S  + RR  DLGI  VFQ G  DK  A   +++   +       +GDD
Sbjct: 63  FGTAAAIITARQSPYVLRRARDLGIAHVFQ-GVHDKRQAFEQLLQHTGLNANVCGYLGDD 121

Query: 355 SIDLPGFAACAWPVAVDDAPDYVKRHARVVLTKAGGQGAFREFSDSVLNAQ 405
            IDLP      +   V +    VK  +  V   +GG GA RE  D VL AQ
Sbjct: 122 VIDLPVLTRVGFKACVANGHREVKLRSHYVTQASGGNGAVREICDLVLAAQ 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,436,568
Number of extensions: 65194
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 2
Length of query: 426
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,203,190
Effective search space: 406678220
Effective search space used: 406678220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)