BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1867.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313255|ref|YP_003777347.1| sugar phosphate isomerase [Herb...   254   4e-69

>gi|300313255|ref|YP_003777347.1| sugar phosphate isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score =  254 bits (650), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/314 (46%), Positives = 194/314 (61%), Gaps = 8/314 (2%)

Query: 7   RVFQEQAQALNMIAERLADE----FEQAVELMYATRGRVIVSGMGKSGIIGSKIAATLAS 62
           +  Q +A A+  +  RL D+      QAV L+    GR +VSG+GKSG IG KIAATLAS
Sbjct: 27  QTLQIEADAILALKNRLGDDASEPLAQAVHLLLQCNGRAVVSGIGKSGHIGRKIAATLAS 86

Query: 63  TGTSSFFVHPGEAYHGDLGMFTEADTAILISYSGETEEVIRLIPSLRHFGLRIIAIVGKR 122
           TGT S F+HP EA HGDLGM T  D  I IS SGET E++ ++P ++  G  IIA+ G  
Sbjct: 87  TGTPSLFMHPAEAAHGDLGMVTPNDVFIAISNSGETGELMAIMPIVKRMGAVIIAMTGND 146

Query: 123 NSTLGKNADVVLDVSVPREACPNNLAPTTSTTATLVMGDALAVALIEKRDFKPNDFARFH 182
           NS+L + A+V L+V V +EAC  NLAPT STTATL MGDALAV+L++ R F   DFAR H
Sbjct: 147 NSSLARMANVHLNVGVDKEACTLNLAPTASTTATLAMGDALAVSLLDARGFLEEDFARSH 206

Query: 183 PGGSLGKRLLTRVKDVMHT--QVPWVMRETPIIDVIGQMTEGGLGMALVSADDSRQTLCG 240
           PGG+LG+RLLT V+DVM +   +P V  +  +   + ++T  G+ M  V   D R    G
Sbjct: 207 PGGALGRRLLTHVRDVMRSGDAIPAVSPDVSLSQALMEITRKGMAMTAVVDADFRP--IG 264

Query: 241 VITDGDLRRALAARKDIYHITAADLMNTSPKTVPENEMFVDAETKMLELNITALVALNEA 300
           V TDGDLRR L   +D      A++M+ +P+TV ++++ VDA   M E  I  L+  +  
Sbjct: 265 VFTDGDLRRLLERGQDFSQFRIAEIMHANPRTVNQDQLAVDAVQLMEEFRINQLLVTDAQ 324

Query: 301 QHVVGVLKLLDAKR 314
             + G L + D  R
Sbjct: 325 GVLTGALHIHDLTR 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 882,636
Number of extensions: 35430
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)