BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1865.p
         (477 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311322|ref|YP_003775414.1| O-antigen flippase [Herbaspiril...   353   2e-98
gi|300312066|ref|YP_003776158.1| export protein [Herbaspirillum ...   156   3e-39

>gi|300311322|ref|YP_003775414.1| O-antigen flippase [Herbaspirillum
           seropedicae SmR1]
          Length = 476

 Score =  353 bits (905), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 189/424 (44%), Positives = 287/424 (67%), Gaps = 2/424 (0%)

Query: 2   SAAANARWIALTQVVKILSQLVNMFVLTRLIAPSEYGLMAMAGVATNLAFVLRDMGTAAA 61
           SA +NARW+ L+Q+V+I  Q+V++F+L+RL+APSEYGL+AMA VA N A +LRDMGT AA
Sbjct: 3   SAMSNARWLTLSQMVRIALQMVSIFILSRLLAPSEYGLLAMATVAVNFASLLRDMGTGAA 62

Query: 62  IIQKAEISQADTSSVFWLNMAGGTLLMVLLFGTAPLLSATFHEPRLTEVLWILSLSFPIA 121
           +IQK  +++  T++VFWLN+  G  + ++L   +P++   F  P L  VL +++LSFP+ 
Sbjct: 63  VIQKENLTRETTNTVFWLNVGLGVSIALVLIAISPMVEDYFRTPHLAPVLCLMALSFPLT 122

Query: 122 ASSTVHQALLERVSRFRLVAGIESTSSLLALLIALLLAYRGLGVWSLIAQALLMAACTTL 181
           +S  VH ALLER S FR +A IE  S+ LAL+ A+ LA+ G GV+SL+ Q L+ A  + L
Sbjct: 123 SSCAVHSALLERESNFRTLARIEIVSAALALVTAVTLAFTGFGVYSLVWQTLVSAMLSAL 182

Query: 182 LMWWFSPFRPKAIFDREALRGVFKFSGSMAGHQLASYLFRNADSFIVGKMLGVTVLGNYS 241
            +W  S +RP+ I+ R   RG+++FSG++ G    ++  RNADS ++G++LG   LG Y+
Sbjct: 183 QLWLASRWRPEKIWSRSEFRGLWRFSGNLTGFSFVNFFARNADSMVIGRILGAIPLGIYA 242

Query: 242 LAYKLMLFPVQNISWVAVRSLFPVMSRRQDDKPYMAALTLRSLKLVSFISAPLMFGVAGV 301
            AYK+M+FP+Q++S+VA R+LFPVMSR+Q  +  MA L LRSL+L++ ++AP+M G+  +
Sbjct: 243 QAYKVMMFPLQSMSYVANRALFPVMSRQQGQRAEMARLYLRSLRLIATVTAPMMAGLWLL 302

Query: 302 SDLFVDAFLGPKWGLVGGILTFLAMVGYVQVISSIASPVLMALGKSDWLFRMSMVGTPLH 361
            + FV   LGP+W  V  IL +LA VG++Q I S    V MA G++D + R+  +G  L 
Sbjct: 303 REPFVRVALGPQWQSVPIILAWLAPVGFLQSIISTTGAVFMATGRTDLMMRLGALGAVLQ 362

Query: 362 IAAYIIGALLDGARGLSIAYLVAAILMAIPGFYLSGKVLSIKLSDVIVSL-LPSALSGLA 420
           + ++ IG    G  G++I YL+A +L AIP FY + + L   L  ++ +L  P A S + 
Sbjct: 363 VGSFFIGVHW-GIEGVAICYLIANVLNAIPHFYFATRELHSNLLQLLRALWQPVAFSLVM 421

Query: 421 MAVL 424
           +A+L
Sbjct: 422 LALL 425


>gi|300312066|ref|YP_003776158.1| export protein [Herbaspirillum
           seropedicae SmR1]
          Length = 500

 Score =  156 bits (394), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 213/418 (50%), Gaps = 3/418 (0%)

Query: 10  IALTQVVKILSQLVNMFVLTRLIAPSEYGLMAMAGVATNLAFVLRDMGTAAAIIQKAEIS 69
           + L   V  L  L    VL RL++P+EYGLM +A +         ++G   AI+Q+ ++S
Sbjct: 16  VGLGNAVGKLVSLSTTLVLARLLSPAEYGLMEIAMMLIAFIGFFNEIGLTTAIVQRPQLS 75

Query: 70  QADTSSVFWLNMAGGTLLMVLLFGTAPLLSATFHEPRLTEVLWILSLSFPIAASSTVHQA 129
           Q   +  F + M    +L +L    A  L+  F +P+L  ++  L++ F + A+ +V +A
Sbjct: 76  QEQVNGCFLIAMGCSVVLFLLTLLAAGPLAGFFRQPQLQPMISTLAVGFIMGAAGSVPEA 135

Query: 130 LLERVSRFRLVAGIESTSSLLALLIALLLAYRGLGVWSLIAQALLMAACTTLLMWWFSPF 189
            L +  +F+ +AGI     +L   ++L LA  G+GVWSL+  +L+  A  +   +  SP+
Sbjct: 136 FLRKQMQFKAMAGITILGIVLQSAVSLGLALAGMGVWSLVWGSLVATATYSGGYFLLSPW 195

Query: 190 RPKAIFD-REALRGVFKFSGSMAGHQLASYLFRNADSFIVGKMLGVTVLGNYSLAYKLML 248
           RP+  +  REA+  V  F   +   ++  YL+ NAD  IVG++LG   LG Y +A+ L  
Sbjct: 196 RPRGRYGVREAVELVL-FGLHVITSRVFWYLYSNADRAIVGRVLGAASLGIYGMAFSLAT 254

Query: 249 FPVQNISWVAVRSLFPVMSRRQDDKPYMAALTLRSLKLVSFISAPLMFGVAGVSDLFVDA 308
            P   I+ + +    P+ ++ Q +   + A+ +   + ++++  P + G+   S   +  
Sbjct: 255 LPSSQITSLVINVAAPLFAKLQHEPARLNAVLVNMTRGIAYVVYPALMGMLACSHELILV 314

Query: 309 FLGPKWGLVGGILTFLAMVGYVQVISSIASPVLMALGKSDWLFRMSMVGTPLHIAAYIIG 368
            LGP+W       + L ++G V+ +  + S VL A+G+   L   + +       A+ +G
Sbjct: 315 VLGPQWEQCQVPFSALCLMGLVKSVDPLLSQVLTAIGQVKRLVAYTALCAVTMSLAFAVG 374

Query: 369 ALLDGARGLSIAYLVAAILMAIPGFYLSGKVLSIKLSDVIVSLLPSALSGLAM-AVLL 425
           A  DG RG+S A+++   L+++   +   ++  + +     +LLP     LAM AVLL
Sbjct: 375 AWADGLRGVSAAWVLVYPLLSVKLLHDVARLTGLSMRGYYRALLPILAGALAMLAVLL 432


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,346,661
Number of extensions: 53767
Number of successful extensions: 296
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 388
Effective length of database: 1,198,455
Effective search space: 465000540
Effective search space used: 465000540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 132 (55.5 bits)