BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1862.p
         (475 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase [...   777   0.0  

>gi|300311318|ref|YP_003775410.1| GDP-mannose pyrophosphorylase
           [Herbaspirillum seropedicae SmR1]
          Length = 471

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/471 (83%), Positives = 429/471 (91%), Gaps = 1/471 (0%)

Query: 5   KIYPVILSGGSGTRLWPLSRAAYPKQFLPLVSEQTMLQETVARVGSWPEVQAPLIVCGNE 64
           KIYPVILSGG+GTRLWPLSRAAYPKQ LPLVSEQTMLQETVARV +WPE  APL+VCGNE
Sbjct: 2   KIYPVILSGGAGTRLWPLSRAAYPKQLLPLVSEQTMLQETVARVCAWPEALAPLVVCGNE 61

Query: 65  HRFMIAEQLREIGVRPLGIMLEPQGRNTAPAVAAAALHLQRLDPEALMLVLPADHVITDV 124
           HRFMIAEQLRE+ VRP  I+LEPQG+NTAPAVAAAAL L R DP+A+MLVLPADHVIT+ 
Sbjct: 62  HRFMIAEQLREMDVRPHAIVLEPQGKNTAPAVAAAALQLMRQDPDAVMLVLPADHVITNR 121

Query: 125 LAFHEAVRRALVSVQQGALATFGIEPTQPETGYGYILRGAAHGTDSGNFLVERFVEKPDL 184
            AFHEAVR A+ SV+QGAL TFGI P++PETGYGYILRGAAHG D+GNF VERFVEKPDL
Sbjct: 122 EAFHEAVRAAMRSVEQGALVTFGITPSKPETGYGYILRGAAHG-DTGNFAVERFVEKPDL 180

Query: 185 ATATGFLQQGGYYWNSGMFLFKARDYLAELEVHRPLIGAAVKEAVAKAYNDLDFCRLDET 244
             A GF+  G YYWNSGMFL +ARDYL ELE+HRPLI AAVK+AVAKAY DLDFCRL E 
Sbjct: 181 ERAQGFVADGRYYWNSGMFLLRARDYLEELELHRPLIAAAVKDAVAKAYTDLDFCRLGEA 240

Query: 245 SFVASPSESIDYAVMENTARAVVVPASIGWSDVGSWSALHEVLPADAEGNVVRGDVHLNQ 304
           +F ASP+ESIDYAVMENT RAVVVPA IGWSDVGSWSAL EV+PADA+GNV RGDV+L+ 
Sbjct: 241 AFGASPAESIDYAVMENTRRAVVVPADIGWSDVGSWSALQEVMPADAQGNVTRGDVYLDG 300

Query: 305 VKNTLVRAESRMVAVLGVEDLVVVETDDVVLVAHRDKVQEVKAFVDKLKNTQRTEHVHHK 364
           V N+LVRAESRMVAVLG++DL+VVETDD VLVAH+DK Q+VK  VD+LK+ +R+EH+HHK
Sbjct: 301 VSNSLVRAESRMVAVLGLQDLIVVETDDAVLVAHKDKAQDVKGVVDQLKDKKRSEHIHHK 360

Query: 365 RVFRPWGSYESVDAGERFQVKRIIVKPGEKLSLQMHYHRAEHWVVVSGSALVTRGEEVTL 424
           RV+RPWGSYESVDAG+RFQVKRIIVKPGEKLSLQMHYHRAEHWVVVSGSALVTRGEEVTL
Sbjct: 361 RVYRPWGSYESVDAGDRFQVKRIIVKPGEKLSLQMHYHRAEHWVVVSGSALVTRGEEVTL 420

Query: 425 LSENESIYLPIGVTHRLENPGKLPLHLIEVQSGSYLGEDDIVRFEDVYKRA 475
           LSENESIYLPIGVTHRLENPGKLPLHLIEVQSGSYLGEDDIVRF+DVYKRA
Sbjct: 421 LSENESIYLPIGVTHRLENPGKLPLHLIEVQSGSYLGEDDIVRFDDVYKRA 471


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,417,688
Number of extensions: 58444
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,198,455
Effective search space: 462603630
Effective search space used: 462603630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)