BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1861.p
         (381 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar py...    86   7e-18
gi|300313699|ref|YP_003777791.1| phospho-sugar nucleotidyltransf...    67   3e-12

>gi|300310038|ref|YP_003774130.1| nucleoside-diphosphate-sugar
           pyrophosphorylase subunits gamma/epsilon [Herbaspirillum
           seropedicae SmR1]
          Length = 238

 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 74/119 (62%), Gaps = 12/119 (10%)

Query: 1   MKAMILAAGKGTRVRPLTYALPKPMIPILGKPVMEYLIEHLVKFGIQDIMVNVSYLHDRI 60
           MKAMI AAG+G R+RPLT + PKP++ + G+P++ + I  LV+ GI +I++N ++L   I
Sbjct: 1   MKAMIFAAGRGERMRPLTDSCPKPLLKVRGRPLIVWQILSLVRAGITEIVINHAHLGQMI 60

Query: 61  ENYFGEGQRFGARIGYSFEGYVDDDGQVFPNPIGSAGGMKKIQEFGGFFDETTLVICGD 119
           E+  G+G RFGAR+ YS EG            + +AGG+ + +   G  ++  + + GD
Sbjct: 61  EDTLGDGSRFGARLLYSPEGTA----------LETAGGIAQARHLLG--EQPFIAVSGD 107


>gi|300313699|ref|YP_003777791.1| phospho-sugar
          nucleotidyltransferase [Herbaspirillum seropedicae
          SmR1]
          Length = 240

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 2  KAMILAAGKGTRVRPLTYALPKPMIPILGKPVMEYLIEHLVKFGIQDIMVNVSYLHDRIE 61
           A+ILA G GTR+R     LPKPM PI G+P +EY +++ +  GI   ++ V Y H+ I 
Sbjct: 5  SAVILAGGLGTRLRSAVPDLPKPMAPIEGRPFLEYQLDYWIAQGIAHFVLAVGYRHEAIS 64

Query: 62 NYFGEGQRFGARIGYSFE 79
           +FG+  R GAR+ Y  E
Sbjct: 65 GHFGQQYR-GARLDYVVE 81


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,275,162
Number of extensions: 56970
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,207,925
Effective search space: 355129950
Effective search space used: 355129950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)