BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1860.p
         (357 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic...   472   e-134

>gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic
           acid transferase [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  472 bits (1214), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/353 (67%), Positives = 271/353 (76%)

Query: 1   LPFDRVSLQDAVRITGTAVERRQRCFLSTPNLNFAIACLEDPQFRLSVIQSDLSIADGMP 60
           +PFDRVSL  A  I   A   R+RCFLSTPNLNFA+ACL+D  FR SVIQSDLSIADGMP
Sbjct: 1   MPFDRVSLGQAAGILQRAASERRRCFLSTPNLNFAVACLDDAAFRHSVIQSDLSIADGMP 60

Query: 61  LIWIARAIGLPINERVAGSSLFQALRLATLPAGAKPMRVYFFGGPPGVAQAASEKLNASA 120
           L+WIARA+GLPI ERVAGSSLFQALR   +  G  P+RVYFFGGPPGVAQAA EKLNA+ 
Sbjct: 61  LVWIARALGLPIKERVAGSSLFQALREQRMENGQAPLRVYFFGGPPGVAQAADEKLNATP 120

Query: 121 SGMTAVGFDSPGFGSIEQMSDAASIERINASGADFLVVALGAKKGQAWIQHNLSRLRVPL 180
           SG+ +VG+ SPGFGSIE+MS   ++  IN S ADFLVVALGAKKGQAWIQHNL +LR P+
Sbjct: 121 SGLRSVGYASPGFGSIEEMSPPQALAHINDSRADFLVVALGAKKGQAWIQHNLVQLRAPV 180

Query: 181 ISHLGAVVNFVAGTVSRAPTWAQKSGLEWLWRIKEEPKLWRRYWDDGIGLLSLLLQRVIP 240
           +SHLGAVVNFVAGTVSRAP WAQK+GLEWLWRIKEEPKLWRRY+DDG+ LL LL  RV+P
Sbjct: 181 VSHLGAVVNFVAGTVSRAPRWAQKTGLEWLWRIKEEPKLWRRYFDDGMALLRLLATRVLP 240

Query: 241 LALAARRSAPGPAQFDGALLQLQEEDGNCILKLSGALGQPNIQRLRTLLPAAASAAHPLV 300
               +RR  P  A  D A ++ + + G+C L  SGALGQ N+ RLR +L  AA    PLV
Sbjct: 241 CIWESRRHRPAAALLDEAEIRCRLDGGDCELLFSGALGQANLARLRPVLAQAAQGDAPLV 300

Query: 301 LDCTGLEYLDSAALASLMLLYGACHASGRSWTMRGVSQSLRHQLESHCAQYLL 353
           LDCT L+Y+DSAALA LMLLYG C   GR W +   S SLR Q+  HCA YLL
Sbjct: 301 LDCTRLQYIDSAALAQLMLLYGDCVRRGRPWAIINASASLRRQITLHCADYLL 353


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,112,695
Number of extensions: 46830
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 271
Effective length of database: 1,212,660
Effective search space: 328630860
Effective search space used: 328630860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)