BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1859.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311316|ref|YP_003775408.1| glycosyl transferase group 2 fa...   528   e-151

>gi|300311316|ref|YP_003775408.1| glycosyl transferase group 2
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 396

 Score =  528 bits (1360), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 274/378 (72%), Positives = 308/378 (81%)

Query: 19  VPVLVLLVQVLSARWVAPCAVAMSAARPRIAVLVPAHNEAGGIGEVVAGIVAQLGQADRV 78
           +P  VLLVQVL+ARW  P  VA S  RPR+AVLVPAHNEAGGI EV+ GI  QL + DRV
Sbjct: 19  IPAAVLLVQVLAARWAGPQPVAESPQRPRMAVLVPAHNEAGGIAEVIVGIRRQLQEGDRV 78

Query: 79  LVVADNCGDETAPIARAAGAEVTERSHAELRGKGYALDHGIKHLAADAPEVVIIVDADCY 138
           LVVADNC D TA IAR AGAEV+ER H  LRGKGYALDHGI+HLAAD PEV+I+VDADC 
Sbjct: 79  LVVADNCSDATADIARHAGAEVSERFHDTLRGKGYALDHGIRHLAADPPEVLIVVDADCL 138

Query: 139 LAEQALEKLARACVQSGRPVQALYLMHAPEGGGPMRKIAEFAWLVKNLVRPLGFQKLGQP 198
           L   ALE++AR C +SGRPVQALYLMHAP G G  RKIAEFAW+VKNLVRPLG+ KLG P
Sbjct: 139 LGAGALERIARVCWRSGRPVQALYLMHAPAGAGSRRKIAEFAWVVKNLVRPLGWHKLGLP 198

Query: 199 CQLMGTGMAFTWPQISQADLATGHIVEDMKLGVDLAEAGQPPLFCPEAVVYSYFPSSDSG 258
           CQLMGTGMAF+W QI QADLATGHIVEDMKLGVDLA AGQ PLFCP+A+VYS+FPSSDSG
Sbjct: 199 CQLMGTGMAFSWQQIGQADLATGHIVEDMKLGVDLARAGQAPLFCPDAMVYSHFPSSDSG 258

Query: 259 VSTQRTRWEHGHLSVIQTYVPRLLGGAFKRGNGALAALALDLSVPPLALLVMLVVAAWCG 318
            +TQRTRWEHGHLSVI +YVPRLLGGA   G GALA LALDL VPPLALLVM+   AW  
Sbjct: 259 AATQRTRWEHGHLSVILSYVPRLLGGALASGQGALAGLALDLCVPPLALLVMMAGGAWVV 318

Query: 319 NLLIWLVLGLSWPLLVSSLLLLAIGASVLLAWGGYGRKVISLAELLGAFGYMARKLPLYF 378
           + L+ ++ G     L+++L++ AI A+VLLAW G+GR VISL EL  AF Y+ARKLPLY 
Sbjct: 319 SALVAVLTGWLAACLLATLIVAAIAAAVLLAWSGFGRDVISLRELGAAFAYVARKLPLYC 378

Query: 379 KFLFNRQVAWVRSKRDSE 396
           KF+FNRQV WVRSKRDSE
Sbjct: 379 KFMFNRQVEWVRSKRDSE 396


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,013,159
Number of extensions: 39798
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)