BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1858.p
         (467 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311315|ref|YP_003775407.1| hypothetical protein Hsero_1998...   679   0.0  

>gi|300311315|ref|YP_003775407.1| hypothetical protein Hsero_1998
           [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/469 (70%), Positives = 372/469 (79%), Gaps = 2/469 (0%)

Query: 1   MHRPRTTLRRLHLALG-LTALISTAPVWAQEWGTYLKPFAADSLWNSRPVNPVFDTFVIP 59
           M + RT   RL   L  L AL +  P  A +WGTY KPFAADSLWNSRPVNP F   VIP
Sbjct: 2   MMQVRTRPPRLLPMLAMLGALYAAMPAQADDWGTYRKPFAADSLWNSRPVNPSFAPDVIP 61

Query: 60  TDAYFPTVTTNTYSTGIFLASPNDPPVTVTGLTGSKGLFHTDDENYHDITIPHWPAAARA 119
           T  YFP +    YSTG+FLASP DPPVTVTG  GSKGL  TD+E YHDITIPHWPA+ + 
Sbjct: 62  TSTYFPAINAGAYSTGVFLASPQDPPVTVTGAAGSKGLLITDEEGYHDITIPHWPASVKP 121

Query: 120 APGTDGHADIVDPTTGIVHSFFKLKQEGTQWTAAMYAWTKIDGRGWPDPGHYYQGARATG 179
           A G+DGHADIVDPTT I+HSF++LKQ GTQWTAA Y+WTK+DGRGWPDP HYYQGARATG
Sbjct: 122 ASGSDGHADIVDPTTNIIHSFWQLKQVGTQWTAAQYSWTKLDGRGWPDPAHYYQGARATG 181

Query: 180 VPAAAGIIRIHEAAQKPQYYPHALAMSLTYSGLSPKPAYVFPATSADTEAATRNKGGIPE 239
           VPA+ G+IR HE  QKP YYPHALAMSLT++GLS  P YVFPATSADT AA  N G  PE
Sbjct: 182 VPASGGLIRTHEVEQKPAYYPHALAMSLTFNGLSANPTYVFPATSADTNAAKLNSGAFPE 241

Query: 240 GSLVMLPPDFDTSKLTNAEVRRIAETLKRYGAYIVDANIGTPFVIYAEIGSDANPSPSGW 299
           G+LVMLPPDFDTSKLT+ E+RR+AETLKRYGAYIVDAN GTPF IY EIG+  N  P+GW
Sbjct: 242 GALVMLPPDFDTSKLTDPELRRVAETLKRYGAYIVDANTGTPFAIYVEIGASYNLHPNGW 301

Query: 300 NNTVASEMQSIRAALRRVVSAQSWIDGNGKTFTPNQNLNLLSMRGNWTQQSGSTLGKYSS 359
           NNT ASE+Q IRAALRRV  A  W+DGNG +FTPNQNLN+LSMRGNWTQQSGSTLGKYSS
Sbjct: 302 NNTAASELQVIRAALRRVTGASGWVDGNGNSFTPNQNLNMLSMRGNWTQQSGSTLGKYSS 361

Query: 360 WDQAVVFPATSSMSEVVNYSNRGMNAVTWANPVMGASYKLTARTTNGGKLRMSVYDQLVG 419
           WDQAVVFPA+SS+SEVVNY+NRG+  + WA PV G +YKLTARTT GGKLR+ V DQ  G
Sbjct: 362 WDQAVVFPASSSVSEVVNYANRGIAGINWAKPVTGRNYKLTARTTGGGKLRLLVQDQATG 421

Query: 420 KVVFDSGYLADGESKTFTWNANSPRLVLYAQS-GVGNSSAVGGQLLKAD 467
           K  FDSGYL +G+SKTFTW A  P L +YA+S G G  S VG +L+ AD
Sbjct: 422 KAAFDSGYLDNGQSKTFTWTATKPALAVYARSGGSGQPSTVGAELISAD 470


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,586,827
Number of extensions: 71342
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,198,455
Effective search space: 453015990
Effective search space used: 453015990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)