BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1855.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311312|ref|YP_003775404.1| glycosyl transferase group 1 fa...   655   0.0  
gi|300312060|ref|YP_003776152.1| glycosyl transferase group 1 pr...    63   4e-11

>gi|300311312|ref|YP_003775404.1| glycosyl transferase group 1
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 419

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/399 (79%), Positives = 346/399 (86%)

Query: 1   MTKKIAYFINQYPKVSHSFIRREIAAVEAQGFAIDRIALRGWDAEVVDADDRAERDRTRY 60
           M  KIAYFINQYPKVSHSFIRREIAAVEAQGF + RIALRGWDAE+VD DDRAE  RTRY
Sbjct: 1   MPTKIAYFINQYPKVSHSFIRREIAAVEAQGFEVVRIALRGWDAEIVDDDDRAELGRTRY 60

Query: 61  ILKGGIGGLLAPMLRQMMAHPKGFFSALGLALKMARRGERGLIYHLVYLLEAAQVVEWTK 120
           +L+ G+ GLLAP+LRQ+ A P  F +ALGLALKMARRGERGL YHL YL EAAQV +W  
Sbjct: 61  VLRRGMAGLLAPLLRQLTAAPGRFLAALGLALKMARRGERGLPYHLAYLAEAAQVAQWCA 120

Query: 121 AFGATHIHAHFGTNSTEIVMLAHCLGGPTYSFTVHGPEEFDKPLALGLDEKIRRSAFTVA 180
           A G  HIHAHFGTNS EIVMLA CLGGP+YSFTVHGPEEFDKP ALGLDEKIRRSAFTVA
Sbjct: 121 AEGVRHIHAHFGTNSAEIVMLAQCLGGPSYSFTVHGPEEFDKPQALGLDEKIRRSAFTVA 180

Query: 181 ITSFCQSQLYRWVEQSVWPKVAIVHCGLDRAFYSDAPVQPQAAARLVCVGRLCEQKGQLL 240
           ITSFCQSQLYRWVEQS W KVAIVHCGL+RAFY+ AP  PQ A RLVC+GRLCEQKGQLL
Sbjct: 181 ITSFCQSQLYRWVEQSAWDKVAIVHCGLERAFYAGAPTTPQIALRLVCIGRLCEQKGQLL 240

Query: 241 LVEAAAALAKKGIRFELVLAGDGEMRLQIEQRIHHYGLQNQIRITGWISSVQVREELLAA 300
           LVEAAA L ++G+ FELVLAGDGEMR QIE+RI H+ LQ  IRITGWISS QVREELLAA
Sbjct: 241 LVEAAAQLMRRGVAFELVLAGDGEMRAQIEERIAHHDLQQHIRITGWISSAQVREELLAA 300

Query: 301 RAMVLPSFAEGLPVVIMEAMALRRPVLTTYIAGIPELVLDGENGWLFPAGDVRRLVDAME 360
           RAMVLPSFAEGLPVVIMEAMALRRPVLTTYIAGIPELV+  ENGWLFPAGD+ RL DAM+
Sbjct: 301 RAMVLPSFAEGLPVVIMEAMALRRPVLTTYIAGIPELVIHEENGWLFPAGDIERLTDAMQ 360

Query: 361 SCLQASPEQLQRMGEAAHARAVVRHSIDTEAAKLAQLFT 399
           +CLQA+PEQL  MG+AA  RAV RHS++ EAAKLA+LF 
Sbjct: 361 ACLQATPEQLAAMGQAAQLRAVERHSVNVEAAKLARLFN 399


>gi|300312060|ref|YP_003776152.1| glycosyl transferase group 1
           protein [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 10/138 (7%)

Query: 217 PVQPQAAARLVCVGRLCEQKGQLLLVEAAAAL----AKKGIRFELVLAGDGEMRLQIEQR 272
           P  P        VGR+ + K    LV A  AL     ++  R  L + G+G +   +  +
Sbjct: 190 PELPAGCMVFGAVGRVQDVKDHATLVNAFIALLAMRPQQRARLRLAIVGEGPLLPALRAQ 249

Query: 273 IHHYGLQNQIRITGWISSVQVREELLAAR--AMVLPSFAEGLPVVIMEAMALRRPVLTTY 330
           +   G+ + +    W+   ++  E++  R    +L S AEG+PV I+EAMA   PV++T 
Sbjct: 250 VQAAGIADLV----WLPGARMDVEVMMRRFSVFMLSSIAEGVPVTILEAMATGLPVISTA 305

Query: 331 IAGIPELVLDGENGWLFP 348
           + G+PE+V +G  G L P
Sbjct: 306 VGGVPEVVTEGATGQLTP 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,174,169
Number of extensions: 47006
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 4
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)