BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1854.p
         (478 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311311|ref|YP_003775403.1| cholera toxin secretion EpsM pr...   610   e-176

>gi|300311311|ref|YP_003775403.1| cholera toxin secretion EpsM
           protein [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score =  610 bits (1573), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 320/481 (66%), Positives = 390/481 (81%), Gaps = 7/481 (1%)

Query: 1   MRRTNLPSSQIVFVLIACVIAAMAGLVLPVLAGMLDGSLAKLAAVPVLLILGGLFLFNKR 60
           M+R +L  SQ + +  A +++ + G+ LPV   +L  S+ +LAA+P L +LGGLFLFN++
Sbjct: 1   MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK 60

Query: 61  LLLLCVLLLRASGDIVLESTRVGSGGGFSLGLGGAINALIILIAFLFIVEKPQLLPRKAW 120
           LLLL + L RASGDIVLESTRVG G    +GLG AIN LIILIAFLF+VEKP+ LPR   
Sbjct: 61  LLLLLIFLFRASGDIVLESTRVGGG----MGLGAAINGLIILIAFLFVVEKPKQLPRWMA 116

Query: 121 VPWFILLAIAVIGMVVSPDKGAALKIVLGLCSYFAVFVCAFYVVRTPEEFRSMILLILAS 180
           VPW +LLA+A  G+++SPD+ AA+KIVL LCSYFAVFVCAFYVVRTPE+FRSM+ L++AS
Sbjct: 117 VPWLVLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIAS 176

Query: 181 SLIPTVYGFVSTALNARGGLSGFRLQGTFGHPNIFAFYLTLVIVLGLYVIKSTQFKLDQF 240
           S++P +YG V+T L  RGGL+ FRLQ TFGHPNI AFYLTLVI LGLYV+KS  F+L QF
Sbjct: 177 SIVPALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQF 236

Query: 241 KRFALGGYLGLLFLLLLLTQTRSAWVACFLIFLLYGVKFERRYLAYMLILGTLALLVPSV 300
           KRFAL GY+ LLF+LLLLTQTRSAW+A F++ LLYG+ FERRYL Y+ IL  LA+LVPSV
Sbjct: 237 KRFALMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSV 296

Query: 301 QERILQLDSGNTVTTYAKLNSFAWRTYLWHSGLNWMSPSHYLYGYGVEAFPFYSPIFFPL 360
           QER++QLDSGNTV TYAKLNSFAWR YLW SGL WMSPSHYL GYGVE+FP+YS  FFPL
Sbjct: 297 QERVMQLDSGNTVQTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPL 356

Query: 361 AGGVNWGAHSVFVQWFFDTGLIGVVAYLAIFYQVMRVLIRYQKQDRLGGIILICTLIEYL 420
           AG   WGAHSVFVQWFFDTGLIG++AYL+IFY V+R L++  + DRLG +ILICTL+EYL
Sbjct: 357 AGTTKWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYL 416

Query: 421 VVSASDNMLAYLAFNWYFWLVMGMGWSVYANSEQGRLEAAGKKNRRLEQASVP---HSKP 477
           VVSASDN+L+YLAFNWYFWL++GMG SVY NSE  + E   +K R L +A++P   H +P
Sbjct: 417 VVSASDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKARPLHRAAMPGLRHPEP 476

Query: 478 A 478
           +
Sbjct: 477 S 477


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.145    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,279,044
Number of extensions: 48283
Number of successful extensions: 214
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 389
Effective length of database: 1,198,455
Effective search space: 466198995
Effective search space used: 466198995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)