BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1853.p
         (561 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311310|ref|YP_003775402.1| exopolysaccharide methanolan sy...   717   0.0  

>gi|300311310|ref|YP_003775402.1| exopolysaccharide methanolan
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/545 (66%), Positives = 430/545 (78%), Gaps = 3/545 (0%)

Query: 18  DTIRPIPQPRFSG-VPWLIVAAGLGVMYIPSFIDLFHGVWGTERNAHGPIVLAVACCYLF 76
            T+ P PQ R  G + WL+VA GL  MY+PSF+DL HGVWG+ERNAHGPIVL VAC YL 
Sbjct: 5   QTLNP-PQERSPGPLSWLLVALGLAAMYVPSFVDLLHGVWGSERNAHGPIVLVVACVYLG 63

Query: 77  VRVRQLLEEGLVERQPAPIAALVVLLLGLLCFVLGRSQTVLFLEAGSLIPMLMAIVLFQF 136
           VR+RQL + GL+ERQPAP+A  +++LLGLLCF LGR+QTVLF+EAGSLIP+L+ IVL  +
Sbjct: 64  VRIRQLRDAGLIERQPAPLAGSLMVLLGLLCFALGRAQTVLFMEAGSLIPILVGIVLLVY 123

Query: 137 GVRTCRRLWFAFFFMLFMVPLPASVVDLLTQPLKIGVSYASEQVLHLLGYPIARSGVILY 196
           GV+TCRRLWFAFFFMLFMVPLPASVVD+LTQPLKIGVSYA++ +L  L YP+ARSGVI+ 
Sbjct: 124 GVKTCRRLWFAFFFMLFMVPLPASVVDVLTQPLKIGVSYAAQHLLQWLDYPVARSGVIIS 183

Query: 197 IGPYQLLVADACAGLNSLFTLEALGLLYMNLVRHQSLLRNVLLAILIVPISFTANTVRVM 256
           IGPYQLLVADACAGLNSLFTLEALGLLYMNLVRH SL+RN LLA+LIVPISFTANTVRV+
Sbjct: 184 IGPYQLLVADACAGLNSLFTLEALGLLYMNLVRHPSLVRNTLLALLIVPISFTANTVRVV 243

Query: 257 VLALITFYMGDAAGQGFLHGFAGMLLFLVALGLIIALDGLLRWIAVRHAGWQGRAVPLPV 316
           VLALIT+Y+GDAAGQGFLHGFAGMLLF VALGLII +D LLRWIAV+ A  +GRA+P   
Sbjct: 244 VLALITYYLGDAAGQGFLHGFAGMLLFFVALGLIIGMDSLLRWIAVQLARGRGRALPAAP 303

Query: 317 QRKRVASTESAREKFVMNIRLAVPMAVAMALSVAVAGMLVPHDPQVLKDGKFSSIVPTQF 376
            R++ A+       F + + +A  +A  M +SV  A  L PH   V K   F++ +P +F
Sbjct: 304 VRRQPAAPLRQDGLFALRLPVAAVLAGGMLVSVGAAYALAPHQESVAKTAPFATFLPQRF 363

Query: 377 GDWREVPSPFLQVDVGLDDGTGRNAEQPYDDVLGRTYVNSRGQMVMLALAYAKEQTQDVK 436
           GDWR VPSP+LQV   L +GTGR AEQPYDD + RTYVNSRGQ VMLALAYA+EQ QDVK
Sbjct: 364 GDWRMVPSPYLQVSTALQEGTGRTAEQPYDDEIARTYVNSRGQQVMLALAYAREQMQDVK 423

Query: 437 IHLPEVCYVAQGFKLSDEQRVALSVGPSDTPVMGSRFIASHSNRLEAVSYWVRIGDGFPN 496
           IH PEVCYVAQGF LS +Q +++      T + G RF+A   +R+E V+YW RIGD  P 
Sbjct: 424 IHPPEVCYVAQGFTLSGQQPLSMRAADGKT-IEGRRFLARSGDRMEPVTYWTRIGDALPV 482

Query: 497 GGLAARWKIFKDGMGGRISDGILVRASSLMPDLSNEADAFALQQGFLKDLADAMRTGHPG 556
           GGL AR  IF+ GM GRI+DGILVRASSL+ D S +  AFALQQGFL+DL  A+R  +PG
Sbjct: 483 GGLDARLTIFRQGMQGRIADGILVRASSLISDPSGQDAAFALQQGFLQDLEAALRKNNPG 542

Query: 557 LLVPA 561
           LL+PA
Sbjct: 543 LLLPA 547


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,712,005
Number of extensions: 72041
Number of successful extensions: 262
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 2
Length of query: 561
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,193,720
Effective search space: 562242120
Effective search space used: 562242120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)