BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1852.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein [Herba...   461   e-131

>gi|300311309|ref|YP_003775401.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 293

 Score =  461 bits (1185), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/293 (76%), Positives = 254/293 (86%), Gaps = 1/293 (0%)

Query: 1   MTTATLTFT-EGASLPNRSIGAILVDSGKLSPENAERILRLQRERGLRFGDAAIQLGLLT 59
           M T TL  + E  SLPNRSIGAIL+D GKL+PE AERILRLQRERG+RFGDAAIQLGLLT
Sbjct: 1   MDTVTLIHSKEQDSLPNRSIGAILIDVGKLTPEKAERILRLQRERGMRFGDAAIQLGLLT 60

Query: 60  QSDIDQALSRQFDYPYLLKGESKVSEKVVAAYNPFSKQVEALRALRSQLMVRWFDVDGKH 119
           Q+DIDQALSRQFDYPYL+KGESKVSE VVAAYNPFS QVE LRALRSQLM+RWFD D  H
Sbjct: 61  QADIDQALSRQFDYPYLMKGESKVSEAVVAAYNPFSAQVETLRALRSQLMLRWFDADLGH 120

Query: 120 KSLSIVSPESGEGRSFIASNLAVVFSQLGERTLLIDADMRHPCQHELFGLDNRNGLSGVI 179
           K+L+I SP  GEGRSF+A+NLAVVFSQLGERTLLIDADMRHP QHELFGLDNRNGLSGVI
Sbjct: 121 KALTITSPARGEGRSFLAANLAVVFSQLGERTLLIDADMRHPRQHELFGLDNRNGLSGVI 180

Query: 180 AGRCSVADALQRVPALLDLSVLPAGPTPPNPQELLGRPNFTQMLADLVQDFDVILVDTPS 239
           AGR + A+A+QR+PAL+DLSV+P GPTPPNPQELLGR  F Q+L +L   +DVIL+DTP+
Sbjct: 181 AGRATAAEAIQRIPALIDLSVMPTGPTPPNPQELLGRQPFAQLLQELAPSYDVILIDTPA 240

Query: 240 GAQYADGNMVSARTGASLVVVRTHVTHISAVRALTDKLTSAHVAVVGSVVNEF 292
           G   ADG MV+ RTGA+L+VVR +V+H+SAVR+LTD+L  A V VVGSV+NEF
Sbjct: 241 GGDCADGQMVAGRTGAALMVVRKNVSHMSAVRSLTDRLADARVMVVGSVLNEF 293


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 906,549
Number of extensions: 39314
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)