BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1851.p
         (464 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis ...   649   0.0  

>gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/462 (72%), Positives = 388/462 (83%), Gaps = 5/462 (1%)

Query: 1   MNLSQFILILQAHRKIILLILSVTVIVALAVSLALPKQYRATSSVVLNYKASDPVTGLVV 60
           MNLSQF+LIL+AH KIIL I  VTV+ AL VSL LPK Y+ATSSVVLNYKA+DPVTG +V
Sbjct: 1   MNLSQFLLILRAHLKIILAIFGVTVVAALVVSLVLPKTYKATSSVVLNYKATDPVTGTMV 60

Query: 61  SPQALPGFMPTQVAIINSPSVALAVVDSLKLADQQEVKDAYNADKHGDLDIRNWLAGLLL 120
           + QALPG+MPTQV IINS S ALAVVD+LKLA    VK++Y A+ +  LDIRNWLAG+LL
Sbjct: 61  TAQALPGYMPTQVDIINSRSTALAVVDALKLAQDPAVKESY-ANSNSQLDIRNWLAGILL 119

Query: 121 KKLDAVASKESSVIDITFRAEDPQFAALVANAFAAAYQNVSMQLKLDPTRKASSYFNDQI 180
             LDA AS++SSVIDIT++  DPQ  A +ANAFA AYQ VSMQLKLDPTRKAS+YFNDQI
Sbjct: 120 GNLDAQASRDSSVIDITYKGRDPQTVATMANAFAEAYQQVSMQLKLDPTRKASAYFNDQI 179

Query: 181 KVLRDAYEQAQVKLSKYQEEHGITNIDNRTDVETNRLNDLSTQLVMAQAALSEAQSRRRQ 240
           KVLR+ YEQAQ KLSKYQ+EHGITN+DNR DVE NRLNDLSTQLV AQ AL+EAQSRR+ 
Sbjct: 180 KVLRENYEQAQAKLSKYQQEHGITNLDNRVDVENNRLNDLSTQLVAAQGALAEAQSRRQ- 238

Query: 241 AAGGGAVDSPDVNANALIQTLKSNLAASEARFEQASKRLGVNHPDYQAAKAERDGLQAQL 300
            A G A +SPDVNAN L+Q LK+NLAASEARF QA+KRLG  HPDY  AKAE DGL+AQL
Sbjct: 239 -AAGSAQNSPDVNANPLVQNLKANLAASEARFAQAAKRLGTQHPDYLNAKAEVDGLRAQL 297

Query: 301 AAATNAISASVGSNATILAKRESEIRAEFEAQKRKVLEMNRTRDELAVLSRELESAQRAY 360
            AA  A SASV +NA+IL KRE+EIR+EF AQK+KVLE+NRTRDEL+VLSR+L+SAQRAY
Sbjct: 298 NAAIAATSASVATNASILQKREAEIRSEFNAQKQKVLELNRTRDELSVLSRDLDSAQRAY 357

Query: 361 ELTSQRFAQTSLEGQSNQSDISLLSAAVPPPGPSSPRIVLNLILAVFVGSILGVMAALGL 420
           ELT+QRF QT+LEGQSNQSDIS+L++A+PP  PSSPR+ +NLIL++FVG +LGVMAALGL
Sbjct: 358 ELTAQRFTQTNLEGQSNQSDISILASAMPPTAPSSPRLFINLILSMFVGLVLGVMAALGL 417

Query: 421 ELTNRRVRSEHDLVEELGLPVLGAITRPPA--AARRRFGFGR 460
           EL NRRVRSE DLVE +GLPVLG I+ P A     RR GFGR
Sbjct: 418 ELINRRVRSEADLVEGIGLPVLGTISHPAAQKGRDRRLGFGR 459


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,023,791
Number of extensions: 34327
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 464
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 375
Effective length of database: 1,198,455
Effective search space: 449420625
Effective search space used: 449420625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)