BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1850.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide expo...   401   e-113

>gi|300311307|ref|YP_003775399.1| periplasmic polysaccharide export
           protein [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score =  401 bits (1031), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/265 (76%), Positives = 230/265 (86%), Gaps = 3/265 (1%)

Query: 1   MRKVVFLLVGLMLA--SWSLFAQADDILLGAGDVIRVKVYGSDDLSLETRISEAGVISYP 58
           MRK++ +L GL++A  ++S  A+A+DI LG GDVIR+ VYGS DL+LETRISEAGVISYP
Sbjct: 1   MRKILLMLAGLLVAVLAFSGSARAEDIPLGPGDVIRINVYGSQDLTLETRISEAGVISYP 60

Query: 59  LVGEVKIGGLSTAQAESKIAGLLKKGGYLLNPQVNILVTVPQSQMVSVLGQVTKPGRYSL 118
           L+GEVKIGG+STAQAE KIAG+LK+GGYL+NPQVNILVT P SQM+SVLGQV KPGRY L
Sbjct: 61  LIGEVKIGGMSTAQAERKIAGMLKQGGYLVNPQVNILVTAPASQMISVLGQVYKPGRYPL 120

Query: 119 DGRRNVADVIALAGGVTPDGGDVVTIIRNDGKGGVSKQLVDIYAITHSGDTTSLPEVGAN 178
           DGRRNVADVIALAGGV PDGGD +TI+R +  G V++  VDIYAITH+GDTT LP VGAN
Sbjct: 121 DGRRNVADVIALAGGVNPDGGDTITIVRTE-DGKVTRTAVDIYAITHNGDTTELPTVGAN 179

Query: 179 DVVYVERALRFYIYGEVQRPGVYKLERGTTVLQALSVGGGLTQRGTERGLVVKRRDADGN 238
           DVVYVER  RFYIYGEVQRPG YKLERGTTVLQAL++GGGLT RGTERGL VKRRDA+G 
Sbjct: 180 DVVYVERYQRFYIYGEVQRPGAYKLERGTTVLQALTLGGGLTPRGTERGLKVKRRDANGE 239

Query: 239 MQEIPVKKEDLLQADDTVYVKESWF 263
           +QEI VKK+DLL  DD VYVKESWF
Sbjct: 240 LQEISVKKDDLLLPDDIVYVKESWF 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 795,931
Number of extensions: 32190
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)