BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1849.p
         (322 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311306|ref|YP_003775398.1| peptidyl/prolyl cis-trans isome...   286   1e-78

>gi|300311306|ref|YP_003775398.1| peptidyl/prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  286 bits (733), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/255 (59%), Positives = 189/255 (74%), Gaps = 4/255 (1%)

Query: 31  CGEKKSASSSSQVVANVDGQEITIHQVNNELAKTGGTEVTKQLLDGLVARQLLVNAAKKD 90
           CG+++ A+S  Q +A+VDG+EITIHQ+N EL K G  E  KQ+LDGLVARQ+LVNAA+K+
Sbjct: 30  CGKQEQAASG-QALASVDGKEITIHQLNAELGKGGAREANKQVLDGLVARQVLVNAARKE 88

Query: 91  KLDADPAVLADMERARNLVLAQSYVASKLKAPTRPLDQEVEDLYRKNPDWFAQRKQYEFA 150
           KLDADPAVLADMERAR+LVLAQSYV  KL  PTRP  QEV   Y ++PDWFAQR+QYEFA
Sbjct: 89  KLDADPAVLADMERARDLVLAQSYVQRKLAKPTRPSQQEVSTFYDQHPDWFAQRQQYEFA 148

Query: 151 QLIIAGSNLTPELNALMDQPGKR-LDDVAAWLDAHHVQFTRQQVIKTTADLPPQMNASLK 209
           +L+I  +++  EL  +M   G R L++VAAWL   H+ FTR QV KT+ DLPP M A +K
Sbjct: 149 ELVIDRASVNEELTKMM--VGVRPLEEVAAWLQKQHIPFTRLQVTKTSMDLPPPMLAGVK 206

Query: 210 NMERGSLFVVIEGPTAILTSVQDVKSTPLSLAVATPQIVQYLVTQKQNQASEQLVENLRK 269
            ME+G LF+V EG  AIL ++ DV++ PLS A AT QI QYL  Q+Q + +EQ V  L+ 
Sbjct: 207 KMEKGQLFIVNEGDAAILAALADVRNVPLSRAAATQQIEQYLANQRQGEITEQAVARLKA 266

Query: 270 DAKIEYSDQAKSFKD 284
           DAKI Y D AK+ KD
Sbjct: 267 DAKIVYFDSAKTLKD 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.127    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,528
Number of extensions: 24460
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,217,395
Effective search space: 288522615
Effective search space used: 288522615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)