BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1848.p (440 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in... 751 0.0 gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis su... 137 2e-33 gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspi... 119 6e-28 >gi|300311305|ref|YP_003775397.1| glucosyltransferase involved in lipopolysaccharide synthesis protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/441 (83%), Positives = 404/441 (91%), Gaps = 1/441 (0%) Query: 1 LIVAYLWVLVRLSHHIFNGDYWVLAIMAFFLSSYFFTEFHERRLRRNPRGPSSFAPV-LD 59 +IVAYLWVLVRL F+GDYW+LAIMAFF+SSYFFTEFHERRLRRNP+G A + +D Sbjct: 1 MIVAYLWVLVRLHGVPFSGDYWMLAIMAFFISSYFFTEFHERRLRRNPKGTRPVASIFVD 60 Query: 60 WLAVAAVLVVVAYICEFYQNLSMRAIFSWVVSTPIGLIISQHVQSRVMRDLHTKGEVSKA 119 WLAV AVL ++ Y+CEFYQ + + +WV+ TP+GL++SQ+ QSRVMRDLHTKGEVSKA Sbjct: 61 WLAVVAVLGLIGYVCEFYQQFAPGVLAAWVIGTPVGLLVSQYAQSRVMRDLHTKGEVSKA 120 Query: 120 IIIGVNPAALKLADRMEKYPSLMIKLMGFFDDRELNRQPPGTYTPLHGKMSDVAAYVRQN 179 IIIGVNPAALKLA+RM+ YP+LMIKLMGFFDDRE+ RQP GT+TPL GKMSDVAAYVR++ Sbjct: 121 IIIGVNPAALKLAERMDNYPALMIKLMGFFDDREIGRQPQGTFTPLMGKMSDVAAYVRKH 180 Query: 180 NINMVYISMPISAQPRVLQMIDELQDTTASIYFIPDIYIFNLIQARFDYVGGMAVMAICE 239 NINMVYISMPISAQPRVLQMIDELQDTTASIYF+PDIYIFNLIQARFDYVGGMAVMAICE Sbjct: 181 NINMVYISMPISAQPRVLQMIDELQDTTASIYFVPDIYIFNLIQARFDYVGGMAVMAICE 240 Query: 240 TPFTGTNNIVKRLSDLVLASGILLMLLPVMVVIAICVKLTSPGPIIFKQRRYGLDGEEIV 299 TPFTG NN VKR+SD++LA+ ILLMLLPV+VVIAICVK TSPGP+IFKQRRYGLDGEEIV Sbjct: 241 TPFTGMNNFVKRVSDILLATVILLMLLPVLVVIAICVKATSPGPVIFKQRRYGLDGEEIV 300 Query: 300 VYKFRSMTVMEDGGKVTQATKGDMRLTKIGGFLRSSSLDELPQFFNVLQGRMSIVGPRPH 359 VYKFRSMTV+EDG V QATKGD RLTKIGGFLR SSLDELPQF NVLQGRMSIVGPRPH Sbjct: 301 VYKFRSMTVLEDGANVQQATKGDARLTKIGGFLRKSSLDELPQFVNVLQGRMSIVGPRPH 360 Query: 360 AVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSL 419 AVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSL Sbjct: 361 AVAHNELYRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSL 420 Query: 420 VFDLWIIFQTVRMVIKRDNAY 440 FDLWII QTVR+V+KR+NAY Sbjct: 421 TFDLWIIVQTVRLVLKRENAY 441 >gi|300312044|ref|YP_003776136.1| lipopolysaccharide synthesis sugar transferase [Herbaspirillum seropedicae SmR1] Length = 461 Score = 137 bits (345), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/186 (42%), Positives = 115/186 (61%), Gaps = 3/186 (1%) Query: 250 KRLSDLVLASGILLMLLPVMVVIAICVKLTSPGPIIFKQRRYGLDGEEIVVYKFRSMTV- 308 KR DL+ + +L +L P+M+ AIC+ L GP++++Q R G + E +V KFRSM V Sbjct: 273 KRSFDLITSCIMLPLLSPLMLGAAICIWLEDRGPVLYRQERVGKNNEHFMVLKFRSMRVD 332 Query: 309 MEDGGKVTQATKGDMRLTKIGGFLRSSSLDELPQFFNVLQGRMSIVGPRPHAVAHNELYR 368 E G A+ GD R+T++G +R +DELPQ FNVL+G MS VGPRP E + Sbjct: 333 AEKAGTPQWASSGDPRITRVGNVMRKYRIDELPQLFNVLRGDMSFVGPRPERPYFVEQFA 392 Query: 369 KQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSLVFDLWIIFQ 428 ++I Y +RH VKPGITGWAQV G ++ D ++++DL Y++ SL D+ I+ Sbjct: 393 REITFYNVRHCVKPGITGWAQVRYKYGASK--DDAVQKLQYDLYYVKNNSLFLDVLILID 450 Query: 429 TVRMVI 434 T+ +VI Sbjct: 451 TLSVVI 456 >gi|300313506|ref|YP_003777598.1| galactosyltransferase [Herbaspirillum seropedicae SmR1] Length = 186 Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 108/190 (56%), Gaps = 11/190 (5%) Query: 249 VKRLSDLVLA--SGILLMLLPVMVVIAICVKLTSPGPIIFKQRRYGLDGEEIVVYKFRSM 306 +KRL D +A + +LL + VMV++A V+LTSPGP ++ R G + KFRSM Sbjct: 1 MKRLFDFAVALVASVLLAIPIVMVMLA--VRLTSPGPALYWSERVGRHNRIFKMPKFRSM 58 Query: 307 TVMEDGGKVTQATKGDMRLTKIGGFLRSSSLDELPQFFNVLQGRMSIVGPRPHAVAHNEL 366 + LT IG FLR SSLDELPQ +++L+G MS+VGPRP ++L Sbjct: 59 RIDTPAVATHLLEDPAQWLTPIGSFLRKSSLDELPQLWSILRGDMSLVGPRPALFNQDDL 118 Query: 367 YRKQIKGYMLRHKVKPGITGWAQVNGLRGETETLDKMKARIEFDLEYLRRWSLVFDLWII 426 ++ H++ PG+TGWAQ+NG R E DK + D EYL+R S +FDL I+ Sbjct: 119 I--TLRTSQGVHELVPGLTGWAQING-RDELPIPDK----VRLDAEYLQRRSFLFDLKIL 171 Query: 427 FQTVRMVIKR 436 + T V+ R Sbjct: 172 WMTALKVLAR 181 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,263,989 Number of extensions: 47689 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 3 Length of query: 440 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 352 Effective length of database: 1,203,190 Effective search space: 423522880 Effective search space used: 423522880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)