BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1847.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein [Herba...   499   e-142

>gi|300311304|ref|YP_003775396.1| EPS biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  499 bits (1285), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/396 (60%), Positives = 297/396 (75%), Gaps = 1/396 (0%)

Query: 1   MCALLVSMTCPFAYAADPGQVVVPYVQYTYLHDDNLLRLSGPDAAQTAFGSPRLSDNVQS 60
           + A+L  M    A A D GQVV PYVQY+ L+DDNLLRL  P  AQ   G+ ++SD VQS
Sbjct: 17  VLAVLAFMAAQQARADDDGQVVTPYVQYSILYDDNLLRLRDPAQAQATLGTTQMSDTVQS 76

Query: 61  KQGGLRIDKTLSRQHILLDASVTKNTFDHFSQFDNDGRDLKADWGWVLGEHVSGNLGYVY 120
           K GG+R D+  SRQHI LDA +T+NTFD+F QFDND RDL A WGWVLGEH+SG++GYVY
Sbjct: 77  KAGGVRFDRMFSRQHIRLDARLTQNTFDNFRQFDNDQRDLNAYWGWVLGEHLSGDIGYVY 136

Query: 121 SRSLTPFQNFRVLQANIRTMDTKYLNVAWQLHPDWAVHVQASKFGLAYDLLSQQSNNFTQ 180
           S+ LTPFQN RVL+ NIRT  T+Y   AWQLHPDW V  Q S+F L YDL S Q+N+F+Q
Sbjct: 137 SQGLTPFQNLRVLEKNIRTAQTRYATAAWQLHPDWTVRGQYSRFSLGYDLPSLQNNSFSQ 196

Query: 181 NIAEFGVDYTPRSGSTAGLQVRRTTGRYPFDSVIGTGTVNNSFVQEDYKAKIVWLYSDKT 240
           +I E G+DYT RSGS AGLQVR T G YP  +++    +NNSF Q++ KA++ WLYSDKT
Sbjct: 197 DIYEMGLDYTARSGSIAGLQVRHTRGNYPEPALVSGALINNSFSQDELKARVSWLYSDKT 256

Query: 241 KLQFLGGVTQRERDAAAPGSGYRGLNARLIGDWAATAKTGFTANLWREIGGVNDIDANFA 300
           KLQFLGG  +RERD     + + GLNARLI DW ATAKT FT NL+REIGGV+DIDAN+A
Sbjct: 257 KLQFLGGYVRRERDTGG-AANFSGLNARLIADWDATAKTAFTMNLYREIGGVSDIDANYA 315

Query: 301 LTTGASLVASYQPTAKLRFDGLVDYEHRNYNGASIVTGVTPSTRRDNYEKATLSLTYSPT 360
           LT G SL   ++ T K+R D  +DY+ R+YNGA++VTGVTPS R+D Y+K +  + Y+P 
Sbjct: 316 LTNGLSLSTRWRATEKIRVDAGIDYQRRDYNGAAVVTGVTPSGRKDTYKKYSFGVIYAPL 375

Query: 361 TSLSLMLAVYRENLKSNINSFGYLSNGISLTSRYEF 396
            SLSLM A+YRE+  SNI+ FGY+SNGI+LT+RYEF
Sbjct: 376 RSLSLMAAIYREDSSSNISGFGYVSNGIALTTRYEF 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,214,157
Number of extensions: 48777
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)