BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1834.p (135 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 249 5e-68 gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 239 5e-65 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 207 3e-55 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 159 9e-41 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 80 4e-17 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 249 bits (636), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 119/134 (88%), Positives = 131/134 (97%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDW 60 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTK+VEADDGS+A+KILEAGA+P++FVLTDW Sbjct: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDW 60 Query: 61 NMPVMDGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKE 120 NMPVMDGL LLKKIR+TPS+AHLPVLMITAEAKKENIV AAQ+GADGYIVKPFNA TLK+ Sbjct: 61 NMPVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKD 120 Query: 121 KIEKILARRANMAK 134 KIEKILARRA++AK Sbjct: 121 KIEKILARRAHLAK 134 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 239 bits (611), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 115/132 (87%), Positives = 126/132 (95%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDW 60 MAA +Q+FLVVDDFSTMRRIVSGLLKELEYTK+VEADDGS+A+KILE+GA I+FVLTDW Sbjct: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 Query: 61 NMPVMDGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKE 120 NMPVMDGL LLKKIRSTP+L+HLPVLMITAEAKKENIV+AAQ GADGYIVKPFNA TLKE Sbjct: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 Query: 121 KIEKILARRANM 132 KIEKILARRA+M Sbjct: 121 KIEKILARRAHM 132 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 207 bits (527), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 97/129 (75%), Positives = 113/129 (87%) Query: 5 DQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDWNMPV 64 DQ+FLVVDDFSTMRRI+ GLLKELEY K+ +ADDG++A KILE+GA+PISFV+TDWNMP Sbjct: 4 DQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMPG 63 Query: 65 MDGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKEKIEK 124 MDGL LLKKIR TP L LPVLM++AEAKKENIV+AA+ GADGYIVKPFNA TL +KI K Sbjct: 64 MDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISK 123 Query: 125 ILARRANMA 133 IL RR++M Sbjct: 124 ILQRRSSMG 132 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 159 bits (401), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 79/130 (60%), Positives = 98/130 (75%), Gaps = 2/130 (1%) Query: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDW 60 M+ + FLVVDDFSTMRRIV LLKEL YT + EA+DG A++ L + FV++DW Sbjct: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQ--FDFVVSDW 58 Query: 61 NMPVMDGLALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKE 120 NMP MDGL +L++IR P+L+ LPVLM+TAEAKKENIV AAQAGA+GY+VKPF A TL E Sbjct: 59 NMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDE 118 Query: 121 KIEKILARRA 130 K+ KI + A Sbjct: 119 KLGKIFEKMA 128 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 80.5 bits (197), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 3/119 (2%) Query: 9 LVVDDFSTMRRIVSGLLKELEYTKMVEADDGSTAMKILEAGAVPISFVLTDWNMPVMDGL 68 L VDD ++R++V LK Y + EA DG A++ +A + VLTD NMP MDGL Sbjct: 6 LAVDDSGSLRQMVVFSLKAAGYN-VTEAVDGVDALE--KAKSQTFDLVLTDQNMPRMDGL 62 Query: 69 ALLKKIRSTPSLAHLPVLMITAEAKKENIVVAAQAGADGYIVKPFNAVTLKEKIEKILA 127 L++ +R S A +P+LM+T E E AGA+G++VKPF+ L E + K++ Sbjct: 63 TLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVIG 121 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 380,309 Number of extensions: 14017 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 25 Length of query: 135 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 59 Effective length of database: 1,260,010 Effective search space: 74340590 Effective search space used: 74340590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)