BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1832.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein ...   233   3e-63
gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein ...    80   5e-17

>gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  233 bits (593), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/116 (97%), Positives = 114/116 (98%)

Query: 1   MSVQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNIEGQTREVLGHIDRLLAEAGSDKTK 60
           MSVQRLHVG RLSEVAIHNGTVYLAGQIAED TQNIEGQTREVLGHIDRLLAEAGSDK+K
Sbjct: 1   MSVQRLHVGNRLSEVAIHNGTVYLAGQIAEDTTQNIEGQTREVLGHIDRLLAEAGSDKSK 60

Query: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116
           ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK
Sbjct: 61  ILSCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAAQK 116


>gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score = 79.7 bits (195), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 60/103 (58%)

Query: 3   VQRLHVGKRLSEVAIHNGTVYLAGQIAEDATQNIEGQTREVLGHIDRLLAEAGSDKTKIL 62
           ++R +   R+S++ I NG  +++GQ+ + A   I  Q  EVL  ID  L   G  + +I+
Sbjct: 4   IERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIAQQAAEVLAKIDAQLQAQGIGRERIV 63

Query: 63  SCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPEL 105
           S  ++LS  + FA  NAVW+ W+  G+AP RA V+A L  P L
Sbjct: 64  SANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGL 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 362,979
Number of extensions: 13691
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)