BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1825.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine ...   288   2e-79
gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine ...    59   3e-10

>gi|300311287|ref|YP_003775379.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 169

 Score =  288 bits (737), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/169 (89%), Positives = 160/169 (94%), Gaps = 2/169 (1%)

Query: 1   MSQTHLSAVPSHHAQRIAFVQASWHKDIVDQCRIGFTEEMAKLGWPASSIDFFELPGAFE 60
           MSQ+HLSAV SHH QRIAF+QA WHKDIVDQCRI FTEEMAKLGWPA+SIDFFELPGAFE
Sbjct: 1   MSQSHLSAVSSHHGQRIAFIQACWHKDIVDQCRIAFTEEMAKLGWPAASIDFFELPGAFE 60

Query: 61  IPLHAKVLAKTGKYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLTP 120
           IPLHAKVLAKTG+YAGIVASGLVVDGGIYRHDFVAQSVISALMQVQL+TEVPVFSAVLTP
Sbjct: 61  IPLHAKVLAKTGRYAGIVASGLVVDGGIYRHDFVAQSVISALMQVQLDTEVPVFSAVLTP 120

Query: 121 HHFHAHSEHHDYFHAHFLVKGREAAQACASTVAKLAEVRAA--RSLNAA 167
           HHFH+HSEHHDYFH HFLVKGREAAQACA+TVAKLA+VRA    SLNAA
Sbjct: 121 HHFHSHSEHHDYFHQHFLVKGREAAQACATTVAKLAQVRAGAQASLNAA 169


>gi|300312880|ref|YP_003776972.1| 6,7-dimethyl-8-ribityllumazine
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 16  RIAFVQASWHKDIVDQCRIGFTEEMAKLGWPASSIDFFELPGAFEIPLHAKVLAKTGKYA 75
           RI  VQA +++D+          E+  LG     I    +PGA EIPL  + +A+T ++ 
Sbjct: 16  RIGIVQARFNEDVCHGLLAACLAELKHLGVADEDILHVTVPGALEIPLALQKMAETEQFD 75

Query: 76  GIVASGLVVDGGIYRHDFVAQSVISALMQVQLETEVPVFSAVLTPHHFHAHSEHHDYFHA 135
            ++A G V+ G  Y  + V+    + + ++ L+  VP+ +AVLT       +E+ +    
Sbjct: 76  ALIALGAVIRGETYHFELVSNESGAGITRIGLDFGVPIANAVLT-------TENDEQAEV 128

Query: 136 HFLVKGREAAQACASTVAKLA 156
               KG +AA+  A  +A LA
Sbjct: 129 RMAEKGADAAR-VAVEMANLA 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 499,233
Number of extensions: 19373
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)