BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1823.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   558   e-160
gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...   410   e-116

>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  558 bits (1439), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/292 (93%), Positives = 281/292 (96%)

Query: 1   MKRIVLFLVTNLAVMLVLSFTASLLGVNRYLTANGLNLGMLLVFCGLMGFGGSFISLFMS 60
           MKR++LFLVTNLAVMLVLS TASLLGVNRYLTANGLN GMLLVFCGLMGFGGSFISLFMS
Sbjct: 1   MKRVILFLVTNLAVMLVLSVTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60

Query: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQTLAARAQLPMPEVAVYDGEPNAFATGASKNN 120
           KTIAKWSTGARVIEQPQNSTELWLLQTVQ LAARAQLPMPEVAVYDG PNAFATGASK+N
Sbjct: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQNLAARAQLPMPEVAVYDGPPNAFATGASKSN 120

Query: 121 SLVAVSTGLLQSMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           SLVAVSTGLLQ MTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD
Sbjct: 121 SLVAVSTGLLQGMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180

Query: 181 SFLRRNNEENSGPGIAYMATVFVCEIVFGILASIIVMYFSRQREYRADAGAASLMGSRTP 240
           SFLRRNNEENSGPGI YM TVFVCEI+FGILASIIVMYFSRQREYRADAGAASLMGS  P
Sbjct: 181 SFLRRNNEENSGPGIGYMVTVFVCEIIFGILASIIVMYFSRQREYRADAGAASLMGSNAP 240

Query: 241 MINALRRLGGLQADGLPQNLQASGISGRQSWLGLFSSHPPLESRIAALQSAR 292
           MINALRRLGG+Q+DGLPQNLQA+GISGR+SW+GLFSSHP LESRIAALQS R
Sbjct: 241 MINALRRLGGMQSDGLPQNLQAAGISGRESWMGLFSSHPSLESRIAALQSRR 292


>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score =  410 bits (1054), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/292 (69%), Positives = 242/292 (82%), Gaps = 1/292 (0%)

Query: 1   MKRIVLFLVTNLAVMLVLSFTASLLGVNRYLTANGLNLGMLLVFCGLMGFGGSFISLFMS 60
           MKRI+LF+ TN+AV++V+S   SLLGV+R+LT +GLNL MLLVF  ++GF GS ISL MS
Sbjct: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLLVFSLVVGFTGSIISLLMS 60

Query: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQTLAARAQLPMPEVAVYDGEPNAFATGASKNN 120
           KT+AKWSTGARVI+ P N TE WLLQTV  LA RA + MPEVAVYDGEPNAFATGA +++
Sbjct: 61  KTMAKWSTGARVIQTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 SLVAVSTGLLQSMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180
           +LVAVSTGLLQ MT+DEVEAVL HEVAHIANGDMVT+TLIQGVVNTFV+F +R+VG+FVD
Sbjct: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGFFVD 180

Query: 181 SFLRRNNEENSGPGIAYMATVFVCEIVFGILASIIVMYFSRQREYRADAGAASLMGSRTP 240
           S LRRN+++ SGPGI Y  TV VC+IVFGI AS+IV +FSR RE+RADAGAA L+G+  P
Sbjct: 181 SALRRNSDD-SGPGIGYTVTVLVCQIVFGIGASLIVAWFSRHREFRADAGAARLLGTPQP 239

Query: 241 MINALRRLGGLQADGLPQNLQASGISGRQSWLGLFSSHPPLESRIAALQSAR 292
           MINAL RLGG   +GLPQNL A GIS +   + LFS+HPPLE RIAAL+  R
Sbjct: 240 MINALARLGGFSPEGLPQNLAALGISDKPGVMELFSTHPPLEQRIAALRGQR 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 859,965
Number of extensions: 34726
Number of successful extensions: 135
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)