BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1820.p
         (127 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311029|ref|YP_003775121.1| protein-glutamate methylesteras...    54   3e-09
gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regula...    54   5e-09

>gi|300311029|ref|YP_003775121.1| protein-glutamate methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score = 53.9 bits (128), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 10  LLIVDDSKVSRMVIKAHVLAVHPDWQVSEAANGEEAIRQVQQGAPDFCTMDINMPGMLGT 69
           LLI+DDS + R  +   V      + +    NG EA+   +  APD  T+DINMP M G 
Sbjct: 4   LLIIDDSALMRRQLM-QVFEQAGGFDICLGRNGREAVELNRSFAPDVVTLDINMPEMDGL 62

Query: 70  DAAAQILQSHPAVRIAIFSANVQEAVQT-RAQQLGAV-FVAKPVTEKSIA 117
            A + ++   P   + + S   Q A+ T  A  LGAV +VAKP    S++
Sbjct: 63  SALSLMMLDRPVPVVMVSSLTEQGALATFEAMNLGAVDYVAKPSGTISLS 112


>gi|300312940|ref|YP_003777032.1| nitrate/nitrite response regulator
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 219

 Score = 53.5 bits (127), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 3/114 (2%)

Query: 10  LLIVDDSKVSRMVIKAHVLAVHPDWQV-SEAANGEEAIRQVQQGAPDFCTMDINMPGMLG 68
           +L+VDD  + R  I+  +L  HPD  V  EA +G + +++  Q  PD   MD+NMPG+ G
Sbjct: 5   ILLVDDHTLFRSGIRL-LLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPGLSG 63

Query: 69  TDAAAQILQSHPAVRIAIFSANVQEAVQTRAQQLGAV-FVAKPVTEKSIAQALR 121
            +A   I+Q  P   + + S + +    T A   GA  ++ K +    + Q+++
Sbjct: 64  LEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIK 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 362,041
Number of extensions: 12367
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,264,745
Effective search space: 65766740
Effective search space used: 65766740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)