BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1818.p
         (669 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311283|ref|YP_003775375.1| carbon starvation A transmembra...  1287   0.0  

>gi|300311283|ref|YP_003775375.1| carbon starvation A transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 689

 Score = 1287 bits (3331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/663 (95%), Positives = 650/663 (98%)

Query: 7   QRGESINAVWLVVASVYVYLIAYRFYSKFIAQRVLGLDGQRMTPAYKFNDGLDYVPTNKY 66
           QRGESINAVWLVVA+V VYLIAYRFYSKFIA RVLGLDG RMTPAYKFNDGLDYVPTNKY
Sbjct: 27  QRGESINAVWLVVAAVCVYLIAYRFYSKFIADRVLGLDGGRMTPAYKFNDGLDYVPTNKY 86

Query: 67  VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWILAGVVFAGAVQDFMVLFISTRRDGRS 126
           VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWILAGVVFAGAVQDFMVLFISTRRDGRS
Sbjct: 87  VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWILAGVVFAGAVQDFMVLFISTRRDGRS 146

Query: 127 LGDLIKSELGQVPGVIALFGAFMIMVIILAVLALIVVKALAESPWGTFTVAATIPIALFM 186
           LGDLIKSELGQVPGVIALFGAFMIMVIILAVLALIVVKALAESPWG+FTVAATIPIALFM
Sbjct: 147 LGDLIKSELGQVPGVIALFGAFMIMVIILAVLALIVVKALAESPWGSFTVAATIPIALFM 206

Query: 187 GVYSRYLRPGRIGEVSWIGFVLLMLAIVGGQYVQEHAVLGQLFSFNGKQLTWMLIGYGFV 246
           GVYSRY+RPGRIGEVSWIGFVLLMLAIVGGQYVQEH  LGQ+F+F+GKQLTWMLIGYGFV
Sbjct: 207 GVYSRYIRPGRIGEVSWIGFVLLMLAIVGGQYVQEHPALGQMFTFDGKQLTWMLIGYGFV 266

Query: 247 ASVLPVWLLLAPRDYLSTFLKIGTIAALALGIIFIAPHLKMHAVTRFIDGSGPVWSGSLF 306
           ASVLPVWLLLAPRDYLSTFLKIGTI ALALGI+FIAPHLKMHAVTRFIDGSGPVWSGSLF
Sbjct: 267 ASVLPVWLLLAPRDYLSTFLKIGTILALALGIVFIAPHLKMHAVTRFIDGSGPVWSGSLF 326

Query: 307 PFLFITIACGAVSGFHALISSGTTPKLLENEQHARFIGYGAMLMESFVAIMALIAASCIE 366
           PFLFITIACGAVSGFHALISSGTTPKLLENE+HARFIGYGAMLMESFVAIMALIAASCIE
Sbjct: 327 PFLFITIACGAVSGFHALISSGTTPKLLENEKHARFIGYGAMLMESFVAIMALIAASCIE 386

Query: 367 PGIYFAMNSPAALIGTTPENVAQVISQWGFHITPEMLTHTAQAVGEHTIISRAGGAPTLA 426
           PGIYFAMNSPAALIGTTPENVAQVISQWGFHITPEMLTHTAQAVGEHTIISRAGGAPTLA
Sbjct: 387 PGIYFAMNSPAALIGTTPENVAQVISQWGFHITPEMLTHTAQAVGEHTIISRAGGAPTLA 446

Query: 427 VGMAQILSGVTGEAMMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLLGAFIPPMKRT 486
           VGMAQILSGVTGEAMMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLLGAFIPPMKRT
Sbjct: 447 VGMAQILSGVTGEAMMAFWYHFAILFEALFILTAVDAGTRAGRFMLQDLLGAFIPPMKRT 506

Query: 487 DSWAASLTATGLCVAGWGYFLYQGVVDPLGGINTLWPLFGISNQMLAGIALILATCVLFK 546
           DSW ASL ATGLCVAGWGYFLYQGVVDPLGGINTLWPLFGISNQMLAGIALILATCVLFK
Sbjct: 507 DSWVASLIATGLCVAGWGYFLYQGVVDPLGGINTLWPLFGISNQMLAGIALILATCVLFK 566

Query: 547 MKRDRFAWVTVVPTTWLLICTLSAGWQKVFDANARVGFLAHARKYQAALDEGKLLAPAKS 606
           MKRDRFAWVTV+PT WLL CTL+AGWQKVFDAN RVGFLAHA KYQAALDEGKLLAPAKS
Sbjct: 567 MKRDRFAWVTVLPTAWLLACTLTAGWQKVFDANPRVGFLAHASKYQAALDEGKLLAPAKS 626

Query: 607 IEQMRQVIFNDYIDAGLAAMFMLVVISLLVFGIRTVLRARAAHQPSVKEAPYEALPASAL 666
           IEQMRQVIFNDY+DAGLAAMFMLVVIS+LVFGIRTVL+AR+AHQPSVKEAPYE LPASAL
Sbjct: 627 IEQMRQVIFNDYVDAGLAAMFMLVVISVLVFGIRTVLKARSAHQPSVKEAPYETLPASAL 686

Query: 667 AQQ 669
           AQQ
Sbjct: 687 AQQ 689


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,078,284
Number of extensions: 85506
Number of successful extensions: 388
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 388
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 577
Effective length of database: 1,184,250
Effective search space: 683312250
Effective search space used: 683312250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 134 (56.2 bits)