BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1814.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311279|ref|YP_003775371.1| cobalamin-5-phosphate synthase ...   356   1e-99

>gi|300311279|ref|YP_003775371.1| cobalamin-5-phosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  356 bits (914), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/269 (73%), Positives = 226/269 (84%)

Query: 2   VEENFTRPAPPRQGVLYQLRLFFIAVQFFTRLPIPRWVGFQSEWLQRCTRYFPLVGWLVA 61
           + E  + P+ P +G+LYQLRLFF A+QFFTRLPIPRWVGF  +WL   TRYFPLVGW+VA
Sbjct: 1   MTEPTSSPSAPGRGLLYQLRLFFTALQFFTRLPIPRWVGFHPDWLAHSTRYFPLVGWIVA 60

Query: 62  WVCALVYLLAVQFWPHTLAVLLSTAVGIWLTGAFHEDGFADVCDGLGGAVSRERALEIMR 121
           W  ALVYLLAVQFWP  +AVLL TA GIWLTGAFHEDGFAD+CDGLGGAVSRERALEIMR
Sbjct: 61  WATALVYLLAVQFWPQPVAVLLGTAAGIWLTGAFHEDGFADLCDGLGGAVSRERALEIMR 120

Query: 122 DSRLGSYGVLGIMLLLAIKVAALNALLPLQVLAALGMAHPLSRWLATCLIWRMDYVRQEG 181
           DSRLGSYGV+G++LL+  ++AAL AL P Q+LAALG+AHPLSRWLATCLIWRMDYVR+EG
Sbjct: 121 DSRLGSYGVIGLVLLMLTRLAALAALQPWQILAALGIAHPLSRWLATCLIWRMDYVREEG 180

Query: 182 KAKPLAQHMGHGEFLLALVCAALPVIGVIALGMMAWQRIVAGIVLAVLATVWLARRLQRR 241
           K+K LAQ M  GEFL+A V   +PVIG +ALG+M+WQ I  G  LA LA +WLA RLQRR
Sbjct: 181 KSKLLAQRMSTGEFLVATVWVVVPVIGTVALGLMSWQHIAMGCGLAALAALWLAYRLQRR 240

Query: 242 LGGYTGDGLGAVQQLSEAAFYLGALATLP 270
           LGGYTGDGLGAVQQLSE  FYLG LA+LP
Sbjct: 241 LGGYTGDGLGAVQQLSETVFYLGVLASLP 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,003,887
Number of extensions: 44709
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)