BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1813.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311278|ref|YP_003775370.1| nicotinate-nucleotide-dimethylb...   530   e-152

>gi|300311278|ref|YP_003775370.1|
           nicotinate-nucleotide-dimethylbenzimidazole-P
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 344

 Score =  530 bits (1366), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/343 (83%), Positives = 307/343 (89%)

Query: 1   MQIPTLVSPHDADLAARLDARINDKTKPLGSLGALERLARQIGLIQGSEHPSLRQPAIVV 60
           MQIPTLVSP DA+L+ARLD  I+DKTKPLGSLG LERLARQIGLIQ +E P + +PAI+V
Sbjct: 1   MQIPTLVSPQDANLSARLDRLIDDKTKPLGSLGVLERLARQIGLIQATERPVIARPAIIV 60

Query: 61  CAGDHGVTAEGVSAYPQSVTWQMVENFLAGGAAINVFARQNQCALYIVDAGVNHDFGQRA 120
           CAGDHGVT EGVSAYPQSVTWQMVENFLAGGAAINVFARQN  AL+IVDAGVNHDFG R 
Sbjct: 61  CAGDHGVTDEGVSAYPQSVTWQMVENFLAGGAAINVFARQNGIALHIVDAGVNHDFGVRP 120

Query: 121 GLVDRKIAPGTANFCQGPAMTMAQCEAALQAGIHFVDALEVDVLGFGEMGIGNTTAAAAL 180
           GLVDRK+APGTANFC+GPAM+ AQC AA++AG+ FVD L+ DVLGFGEMGIGNTTAAAAL
Sbjct: 121 GLVDRKVAPGTANFCRGPAMSQAQCAAAMEAGMRFVDTLQADVLGFGEMGIGNTTAAAAL 180

Query: 181 MAAFTGSAVADCVGAGAGLDAQGMARKADAITRALHLHAQAHTPLERLAALGGLEIAFMT 240
           MAA TG AV DCVGAG GLDAQG++RKADAITRAL LHAQA TPLERLAALGG EIAFM 
Sbjct: 181 MAALTGIAVQDCVGAGTGLDAQGVSRKADAITRALQLHAQAQTPLERLAALGGFEIAFMC 240

Query: 241 GAMLRAAQRRMVLLIDGFIVTSALLVAQALQPAVLEYCVFSHCSDEAGHRRMLQYLGAHP 300
           GAMLR AQRRMVL+IDGFIVTSALLVA ALQP VLEYCVFSHCSDEAGH RML +LGA  
Sbjct: 241 GAMLRGAQRRMVLVIDGFIVTSALLVAAALQPVVLEYCVFSHCSDEAGHGRMLAHLGARA 300

Query: 301 LMQLDLRLGEGTGAALALPLLRSAVNFLERMATFSSASVSKQH 343
           LMQLDLRLGEGTGAALALPLL++AVNFL  MATFSSASVS +H
Sbjct: 301 LMQLDLRLGEGTGAALALPLLQAAVNFLADMATFSSASVSGKH 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 991,351
Number of extensions: 39992
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)