BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1806.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311263|ref|YP_003775355.1| pyridoxal phosphate biosyntheti...   443   e-126

>gi|300311263|ref|YP_003775355.1| pyridoxal phosphate biosynthetic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  443 bits (1139), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/257 (92%), Positives = 250/257 (97%)

Query: 1   MSFLQPAGPSIELGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60
           MSFLQPAGP+IELGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI
Sbjct: 1   MSFLQPAGPAIELGINIDHVATLRNARGTRYPDPIRAALEAEEAGADAITLHLREDRRHI 60

Query: 61  RDDDVKAIRPLLQTRMNLEAAVTKEMIDFACAIQPQDVCLVPEKRTEVTTEGGLDVRGHF 120
           RDDDVKAIRPLLQTRMNLEAAVT+EMIDFAC I+PQDVCLVPEKRTEVTTEGGLDV GHF
Sbjct: 61  RDDDVKAIRPLLQTRMNLEAAVTREMIDFACFIRPQDVCLVPEKRTEVTTEGGLDVVGHF 120

Query: 121 SDVQAAIAQLQQERIRVSLFIDADIEQIQAAAESGAPVIELHTGRYADATSAQEQQEELE 180
           +DVQAAI QLQQE+IRVSLFIDAD++QI+AAAESGAPVIELHTGRYADATS QEQQEELE
Sbjct: 121 ADVQAAIRQLQQEQIRVSLFIDADVQQIKAAAESGAPVIELHTGRYADATSEQEQQEELE 180

Query: 181 RIRAAVHEGVKLGLKVNAGHGLHYTNVQAIAAIPQIAELNIGHAVVAHAVFAGWRNAVSE 240
           RIR AV EGVKLGLKVNAGHGLHYTNVQAIAAIP+IAELNIGHAVVAHAVFAGWRNAVSE
Sbjct: 181 RIRLAVQEGVKLGLKVNAGHGLHYTNVQAIAAIPEIAELNIGHAVVAHAVFAGWRNAVSE 240

Query: 241 MKAIMVKARLDALKSPA 257
           MKAIM+KARL+ALK+ A
Sbjct: 241 MKAIMIKARLEALKAKA 257


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 659,932
Number of extensions: 22227
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)