BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1805.p
         (288 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311262|ref|YP_003775354.1| DNA repair protein [Herbaspiril...   526   e-151

>gi|300311262|ref|YP_003775354.1| DNA repair protein [Herbaspirillum
           seropedicae SmR1]
          Length = 286

 Score =  526 bits (1356), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/288 (92%), Positives = 270/288 (93%), Gaps = 2/288 (0%)

Query: 1   MTTMLTASKLDAQLDGQAADPAVTPSVPQAPAKAPARKPATPRARSRAVPEKEHKVLAQP 60
           MTTMLT S+LD+Q D   A        PQAPAK PARK A PRARSRAVPEKEHKVLAQP
Sbjct: 1   MTTMLTESQLDSQADPANA--VAPAVAPQAPAKTPARKTAAPRARSRAVPEKEHKVLAQP 58

Query: 61  GFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEV 120
           GFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEV
Sbjct: 59  GFVLHSYPYKETSLIIDVFSRDHGRVALVAKGAKRPHSKLRGALQTFQPLSLSWSGKSEV 118

Query: 121 RTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENA 180
           RTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENA
Sbjct: 119 RTLTDAEWVGGLLPLEKSALLCGFYLNELLVKLLAREDAHPALFDHYVATLNKLAHGENA 178

Query: 181 PIVLRQFERILLKQTGVAGNWSHCVVSGKAVQPDGIYVVDPEQGTRPERLSDRAPKVSGK 240
           PIVLRQFERILLKQTGVAGNWSHCVVSGK V+PD IYVVDPEQGTRPERLSDRAPKVSGK
Sbjct: 179 PIVLRQFERILLKQTGVAGNWSHCVVSGKTVRPDLIYVVDPEQGTRPERLSDRAPKVSGK 238

Query: 241 TLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 288
           TLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL
Sbjct: 239 TLLDMEREDYSDPTTQLQSKFLMRYLLAHHLGGAQLNTRQILIDLMQL 286


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 870,565
Number of extensions: 34119
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 204
Effective length of database: 1,222,130
Effective search space: 249314520
Effective search space used: 249314520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)