BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1802.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I) fa...   596   e-172
gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I) fa...   121   8e-29

>gi|300311259|ref|YP_003775351.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  596 bits (1536), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/304 (97%), Positives = 301/304 (99%)

Query: 1   MQALLGNFALILFVLMLVTGVIWFADTFFLSKQRRARADAALAEFDARVARDEAQGIKRD 60
           MQALLGNFALILFVLMLVTGVIWFADTFFLSKQRRARADAALAEFDARVARDEAQGIKRD
Sbjct: 1   MQALLGNFALILFVLMLVTGVIWFADTFFLSKQRRARADAALAEFDARVARDEAQGIKRD 60

Query: 61  GSVASSRADLQAHHLKQPAWIEYSGSFFPVIALVFCLRSFLYEPFKIPSSSMVPTLLVGD 120
           GSVASSRADLQAHHLKQPAWIEYSGSFFPVIALVFCLRSFLYEPFKIPSSSMVPTLLVGD
Sbjct: 61  GSVASSRADLQAHHLKQPAWIEYSGSFFPVIALVFCLRSFLYEPFKIPSSSMVPTLLVGD 120

Query: 121 LILVNKFTYGIRLPIINKKIIEVGEPQRGDVMVFKFPKDPSVDYIKRVVGVPGDKIVYKN 180
           LILVNKFTYGIRLPIINKKIIEV +PQRGDVMVFK+PKD SVDYIKRVVGVPGDKIVYKN
Sbjct: 121 LILVNKFTYGIRLPIINKKIIEVNQPQRGDVMVFKYPKDMSVDYIKRVVGVPGDKIVYKN 180

Query: 181 KRLTINGEQISYKALPDYLDQENLTYYKQWQENLTGVEHKILTDERAPNFVPNPDAFPHH 240
           KRLT+NGEQISYKALPDYLD+ENLTYYKQWQENLTGVEHKILTDERAPNFVPNPDAFPHH
Sbjct: 181 KRLTVNGEQISYKALPDYLDEENLTYYKQWQENLTGVEHKILTDERAPNFVPNPDAFPHH 240

Query: 241 ELCTYNADGFACTVPPGEYFMMGDNRDNSLDSRYWGFVPDQNIVGKAFFVWMNLGDITRI 300
           ELCTYNA+GFACTVPPGEYFMMGDNRDNSLDSRYWGFVPDQNIVGKAFFVWMNLGDI RI
Sbjct: 241 ELCTYNAEGFACTVPPGEYFMMGDNRDNSLDSRYWGFVPDQNIVGKAFFVWMNLGDIKRI 300

Query: 301 GSFH 304
           GSFH
Sbjct: 301 GSFH 304


>gi|300311795|ref|YP_003775887.1| signal peptidase I (SPase I)
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  121 bits (303), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 21/207 (10%)

Query: 91  IALVFCLRSFLYEPFKIPSSSMVPTLLVGDLILVNKFTYGIRLPIINKKIIEVGEPQRGD 150
           IAL+   RS + +   +PS SM+PT+ +GD ILV+K  Y +RLP+ +  ++ +GEPQRGD
Sbjct: 19  IALMVMFRSAIADYNVVPSGSMLPTVQIGDRILVDKMAYDLRLPLTHISLLRLGEPQRGD 78

Query: 151 VMVFKFPKDPSVDYIKRVVGVPGDKIVYKNKRLTINGEQISYK---ALPDYLDQENLTYY 207
           ++     +   +  +KR+VG+PGD +  ++  L ING+   Y      P+  D  +   Y
Sbjct: 79  IVTIDSRQAGEL-LVKRIVGLPGDVVELRDNVLFINGQPAHYHPAAEAPEAGDGSDQAAY 137

Query: 208 KQWQENLTGVEHKILTDERAPNFVPNPDAFPHHELCTYNADGFACTVPPGEYFMMGDNRD 267
           +   E    +EH +      P+              +Y        VPPG Y M+GDNRD
Sbjct: 138 R--DERYGAMEHAVRLSAAHPSL-----------HSSYG----PVVVPPGHYMMLGDNRD 180

Query: 268 NSLDSRYWGFVPDQNIVGKAFFVWMNL 294
           NS+DSRY+GF     ++G+   +  +L
Sbjct: 181 NSMDSRYFGFFARDELMGRTRRIAFSL 207


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 934,944
Number of extensions: 37403
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)