BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1798.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311255|ref|YP_003775347.1| sigma-E factor regulatory (nega...   522   e-149

>gi|300311255|ref|YP_003775347.1| sigma-E factor regulatory
           (negative regulator) transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 338

 Score =  522 bits (1345), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/344 (76%), Positives = 295/344 (85%), Gaps = 6/344 (1%)

Query: 1   MRQRRRLYGVLCFLSVLLAPSAHAADGVASPTVSEAPASSPLLAQLQKMQSAAQRLNYSG 60
           MRQ  RL GVLC L  LL PSAHAA+G       +A ASS L+AQLQKMQS+AQ LNYSG
Sbjct: 1   MRQTGRLLGVLCLLPALLLPSAHAAEG------EQASASSLLMAQLQKMQSSAQHLNYSG 54

Query: 61  SFVYQQAALIRSSRVTHVVAGKSELEKLELLDGRPSEFVRDNEDVASYLPDERLVRMERR 120
            FVYQQAALIRSSRVTHVV GK+ELEKLELLDG+P+EF+R N++VASYLP  R +RME+R
Sbjct: 55  RFVYQQAALIRSSRVTHVVVGKNELEKLELLDGKPAEFIRSNDEVASYLPQSRTIRMEKR 114

Query: 121 VTRDVFPAIVDARPEDLASHYRIQAGADERVAGRTCHAIVLEPRDSLRYGYRFCTDQASG 180
           VTRDVFPAIVD RP+DL + Y ++AG+DERVAGR C  ++LEPRD LRYGYRF TD+A+G
Sbjct: 115 VTRDVFPAIVDVRPQDLGAQYHLRAGSDERVAGRDCRVVMLEPRDKLRYGYRFWTDKATG 174

Query: 181 LLLRAQTLDAKGEVVEQIAFTQIEIGAIDRARVNPTYRDTRGWRIEKAAMAPADLSAWQV 240
           LLLRAQTLD +GEV+EQIAFTQIEIG IDRARVNPTY+DT GW IEKA M P DL  WQV
Sbjct: 175 LLLRAQTLDGQGEVIEQIAFTQIEIGGIDRARVNPTYKDTHGWHIEKAVMTPIDLPQWQV 234

Query: 241 TPPPGFRKIQQVRRLISDSAPEGAAPAQNRPAQREVSQIVFSDGLAAISVFIEPGSQGRE 300
           TPPPGFRKIQQVRRL++ SA +GAAPAQNR A+REVSQIVFSDGLAAISVFIEPGS GRE
Sbjct: 235 TPPPGFRKIQQVRRLMAGSAADGAAPAQNRAAEREVSQIVFSDGLAAISVFIEPGSPGRE 294

Query: 301 ESTIQQGAMNILGRRYGNYWLTVVGEVPAAAIRQVANSIELKSK 344
           E + QQGAM+ILGR  G+YWLTVVGEVPAAAIRQVA+SIELKSK
Sbjct: 295 EGSAQQGAMHILGRPQGDYWLTVVGEVPAAAIRQVADSIELKSK 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,112,649
Number of extensions: 48338
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)