BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1795.p
         (165 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311252|ref|YP_003775344.1| flagellar hook-length control p...   256   9e-70

>gi|300311252|ref|YP_003775344.1| flagellar hook-length control
           protein [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  256 bits (653), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 150/166 (90%), Gaps = 1/166 (0%)

Query: 1   MSIAVSADIKPSRLLLLVNGFACLCVALMGVLVPFWTPGSWSWLERLVLALACILAAVLA 60
           MSIAVSADIKPSRLLLLV GFACLCVAL GVL+  W PGSWSW  R+ LALACI+AA +A
Sbjct: 1   MSIAVSADIKPSRLLLLVTGFACLCVALTGVLLCVWLPGSWSWPARIALALACIIAAGVA 60

Query: 61  LVLVLRERKIIWLHISASGQIRVVEHLLP-SARAKPQVMKAGLAQLLAGSTIWPGMLFLR 119
           L+ VLRERK IWLHIS +GQIRVVEHLL  S+R KPQVM AGLAQLLAGSTIWPGMLFLR
Sbjct: 61  LLTVLRERKTIWLHISGTGQIRVVEHLLAASSRTKPQVMSAGLAQLLAGSTIWPGMLFLR 120

Query: 120 LRLENGKTRTIPILTDSVSEDTFRALSVACRWLISHNTAKARMLEK 165
           LRLE+GKTRTIP+L+DSVSEDTFRALSVACRWLISHNTAKARMLEK
Sbjct: 121 LRLESGKTRTIPVLSDSVSEDTFRALSVACRWLISHNTAKARMLEK 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 459,742
Number of extensions: 15335
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 87
Effective length of database: 1,250,540
Effective search space: 108796980
Effective search space used: 108796980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)