BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1794.p (413 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein... 842 0.0 gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein... 221 7e-59 gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein... 121 9e-29 >gi|300311251|ref|YP_003775343.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 413 Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/413 (98%), Positives = 411/413 (99%) Query: 1 LSRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF 60 +SRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF Sbjct: 1 MSRTRERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDATPFTTHFAGEVKGF 60 Query: 61 NIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLVVTDENAERIGVMIGSGIGGLPLIEE 120 NIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGL VTDENAERIGVMIGSGIGGLPLIEE Sbjct: 61 NIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLTVTDENAERIGVMIGSGIGGLPLIEE 120 Query: 121 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM 180 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM Sbjct: 121 THAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARM 180 Query: 181 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG Sbjct: 181 IMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAG 240 Query: 241 VLVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGINADEVQ 300 V+VLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAG+N DEVQ Sbjct: 241 VMVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGVNPDEVQ 300 Query: 301 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH 360 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH Sbjct: 301 YLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVH 360 Query: 361 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM 413 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM Sbjct: 361 NQVSPPTMNIFNQDPECDLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGKM 413 >gi|300313010|ref|YP_003777102.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 414 Score = 221 bits (564), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 142/418 (33%), Positives = 213/418 (50%), Gaps = 12/418 (2%) Query: 1 LSRTR-ERRVVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKFDA-TPFTTHFAGEVK 58 ++R R ERRVV+TG+ ISP+G + + +K G + + + +D T Sbjct: 1 MTRARTERRVVVTGMAGISPIGTDWNSALAQLKSGSNAVQRMPGWDEYVGLHTRLGAPAA 60 Query: 59 GFNIEDYIPAKEARHMDTFIHFGMAAGIQAMQDSGLVVTDE---NAERIGVMIGSGIGGL 115 F++ + K R M A A+ D+GL+ D+ + ++G+ GS G Sbjct: 61 EFSLSERYNRKTTRSMGRVALMATRASEWALADAGLL--DDPLLKSGQLGIAYGSSAGTP 118 Query: 116 PLIEETHAELTNRGPRRISPFFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIG 175 I + + R I+ + + N+ + FG+ G + +ACT+G IG Sbjct: 119 NAIADFAMMFAEKNTRDINANTYLKMMAHTAPVNMGVFFGITGRIITTSSACTSGSQGIG 178 Query: 176 SAARMIMYGDADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVL 235 A I G MVAGGAE + F + A S RND P P+D+DRDG VL Sbjct: 179 YAYETIRSGRQLAMVAGGAEE-LCATEAAVFDTLYATSVRNDTPQVTPSPFDRDRDGLVL 237 Query: 236 GEGAGVLVLEEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDGPRRCVLNALRDAGIN 295 GEGAG L+LE+ EHA+ARGA I+AE++GFG + D H+T PN + + AL DAG+ Sbjct: 238 GEGAGSLILEDLEHAQARGAHIHAEIVGFGTNSDGAHVTNPNAATMQAAIQMALDDAGLP 297 Query: 296 ADEVQYLNAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLT 355 A + Y+NAHGT T GD E+ A FG ++S KS GH LG G LE L+ Sbjct: 298 ASAIGYINAHGTGTRQGDVAETQATARVFGK---ATPISSLKSYMGHTLGACGALEAWLS 354 Query: 356 VLAVHNQVSPPTMNIFNQDPEC-DLDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 + + + PT+N+ + DP+C +LDY R ++ + + N+F FGG N +L+ + Sbjct: 355 IEMMRHGWFAPTINLQHPDPDCGELDYLTGNGRALECEYVMSNNFAFGGINTSLIFKR 412 >gi|300313008|ref|YP_003777100.1| 3-oxoacyl-[acyl-carrier-protein] synthase II [Herbaspirillum seropedicae SmR1] Length = 399 Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 111/416 (26%), Positives = 185/416 (44%), Gaps = 35/416 (8%) Query: 9 VVITGLGCISPVGNNVADTWSAIKEGKSGIATVTKF-DA--TPFTTHFAGEVKGFNIEDY 65 + + LG + P+G+ + + G SG+ ++ DA P + +D+ Sbjct: 3 LYLNALGMVCPLGSAHDAIRTRLLAGVSGLRADARYLDAHGEPLALGAVPDDTRLPEDDH 62 Query: 66 IPAKEARHMDTFIHFGMAAGIQAMQDSGLVVTDENAERIGVMIGSGIGGLPLIEETHAEL 125 +P +E R + + I+ D+ + AERIG+++G+ G+ E A Sbjct: 63 LPLRE-RSRNNRLALAALQRIRVQVDA--AIARYGAERIGIVLGTSTSGIAEGEAAFAAR 119 Query: 126 TNRGPRRISP-FFIPASIINMISGNLSIKFGLKGPNLAIVTACTTGLHCIGSAARMIMYG 184 P + + + L + G GP +AC + I SAAR++ G Sbjct: 120 AAS--GSFPPGYHYGQQELGSPATALQLTLGTTGPAYVQSSACASSGKAIASAARLLNMG 177 Query: 185 DADVMVAGGAESSVSPLGIGGFASARALSTRNDDPATASRPWDKDRDGFVLGEGAGVLVL 244 D ++ GG ++ + I GF + ++S + +P + R G +GEGA + +L Sbjct: 178 LCDAVLCGGVDT-LCQFTIAGFTALESVSAQRCNPLSL------HRQGINIGEGAALFLL 230 Query: 245 EEYEHAKARGAKIYAELLGFGMSGDAYHMTAPNLDG--PRRCVLNALRDAGINADEVQYL 302 A +L G+G S DAYH++AP+ +G + + ALR AG+ A ++ Y+ Sbjct: 231 TREPAA--------VQLSGWGESSDAYHISAPDPEGRGAQLAIGQALRRAGLTASQIDYI 282 Query: 303 NAHGTSTPLGDKNESDAIKAAFGDHAYKMVVNSTKSMTGHLLGGAGGLETVLTVLAVHNQ 362 N HGT+TP D ES ++A FG ++ V+STK TGH LG A +E L L + + Sbjct: 283 NLHGTATPQNDAMESKVVQALFG---LEVPVSSTKPFTGHTLGAASAIEAGLCWLLMQDD 339 Query: 363 ----VSPPTMNIFNQDPECD--LDYCANQARDMKIDIAVKNSFGFGGTNGTLVIGK 412 + PP + DP Q + + NSF FGG+N LV + Sbjct: 340 NPDGLLPPHLWDGVADPALPALAPVQVGQRLGRPLRHVLSNSFAFGGSNVALVFSR 395 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,373,763 Number of extensions: 61222 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 3 Length of query: 413 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 325 Effective length of database: 1,203,190 Effective search space: 391036750 Effective search space used: 391036750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)