BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1786.p
         (212 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum form...   318   2e-88
gi|300312858|ref|YP_003776950.1| inhibition of septum formation ...    79   3e-16

>gi|300311243|ref|YP_003775335.1| nucleotide-binding, septum
           formation inhibitor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 226

 Score =  318 bits (815), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/210 (81%), Positives = 184/210 (87%)

Query: 1   MSQNHPNPSQVRLILGSSSIYRKELLSRLGLPFETMAPDIDESPQPGESPQATALRLAHQ 60
           MS +H      RLILGSSS+YRK+LL RLGLPFETM PDIDE+PQ GE+P+ATALRLA  
Sbjct: 16  MSHSHFTAPTTRLILGSSSVYRKQLLERLGLPFETMTPDIDETPQAGETPEATALRLARA 75

Query: 61  KAGAIAARVGAALVIGSDQVATLDGQQIGKPGNHANALKQLQWMRGREVIFHTALCLWDG 120
           KA AIAAR GAALVIGSDQVATLDGQQIGKPGNHANAL+QLQ MRGREVIFHTALCLWDG
Sbjct: 76  KAAAIAARAGAALVIGSDQVATLDGQQIGKPGNHANALRQLQMMRGREVIFHTALCLWDG 135

Query: 121 RRADAATAAQVCNVQTLVRFRNLDDAELEAYLRIEQPYDCAGSAKNEGLGIAILDSIHSD 180
           RR DAA AAQ+CNVQTLVR R+L DAEL+AYL IEQPYDCAGSAKNEGLGIAIL+SI SD
Sbjct: 136 RRTDAAQAAQLCNVQTLVRMRDLSDAELDAYLHIEQPYDCAGSAKNEGLGIAILESIRSD 195

Query: 181 DPTALTGLPLIALTSMLRQAGVKFFAAGLP 210
           DPTALTGLPLIALT+MLRQAGV FF    P
Sbjct: 196 DPTALTGLPLIALTTMLRQAGVGFFGLTAP 225


>gi|300312858|ref|YP_003776950.1| inhibition of septum formation
           nucleotide-binding protein [Herbaspirillum seropedicae
           SmR1]
          Length = 204

 Score = 79.0 bits (193), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 14/208 (6%)

Query: 7   NPSQVRLILGSSSIYRKELLSRLGLPFETMAPD--IDESPQPGESPQATALRLAHQKAGA 64
            P+  ++ L S S  R+ELL ++G+ FE +  D  +DES  PGE+P     R+   K  +
Sbjct: 2   KPADQKIYLASKSPRRRELLRQIGIDFELLLSDKEVDESVLPGEAPMDYVARVTRAKLDS 61

Query: 65  -----IAARVGAALVIGSDQVATLDGQQIGKPGNHANALKQLQWMRGR--EVIFHTALCL 117
                I  ++    ++ +D    +D   +GKP +H  A++ +  + GR  +V+   A+ +
Sbjct: 62  AQQTMILRQLPHRPLLSADTTVVVDDLILGKPADHDEAVRMISLLSGRTHQVLTSVAVGV 121

Query: 118 WDGRRADAATAAQVCNVQTLVRFRNLDDAELEAYLRIEQPYDCAGSAKNEGLGIAILDSI 177
             G         Q    Q+ V F  L +  + AY    +PYD AG+   +GL    + +I
Sbjct: 122 TMGVETQVWQIVQ----QSDVSFAPLTEQAIAAYCHTVEPYDKAGAYGIQGLASVFISNI 177

Query: 178 HSDDPTALTGLPLIALTSMLRQAGVKFF 205
                + + GLPL     +L+QAGV+  
Sbjct: 178 VGSH-SGIMGLPLFETAQLLQQAGVRIL 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 636,041
Number of extensions: 23185
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,236,335
Effective search space: 161959885
Effective search space used: 161959885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)