BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1780.p (630 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911... 1174 0.0 gi|300309883|ref|YP_003773975.1| GGDEF domain/EAL domain signal ... 101 1e-22 gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator o... 97 3e-21 gi|300311038|ref|YP_003775130.1| hypothetical protein Hsero_1709... 94 5e-20 gi|300312012|ref|YP_003776104.1| phosphodiesterase transmembrane... 91 2e-19 >gi|300311236|ref|YP_003775328.1| hypothetical protein Hsero_1911 [Herbaspirillum seropedicae SmR1] Length = 600 Score = 1174 bits (3036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 559/600 (93%), Positives = 577/600 (96%) Query: 27 LRGADDPMLSLLHEIIAQRKLSALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLSLFKV 86 + G +DPMLSLLHEIIAQRKL+ALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPL+LFKV Sbjct: 1 MSGTEDPMLSLLHEIIAQRKLTALFQPIVRMRNGEILGYEGLIRGPSNTPLHSPLALFKV 60 Query: 87 ARTHNLSVQMEYLCRHIVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVN 146 AR HN+SVQMEYLCRHIVLTRFAQLGL GNLFLNVSPGALMQPEAIQGETLRYL+ LGVN Sbjct: 61 ARAHNMSVQMEYLCRHIVLTRFAQLGLPGNLFLNVSPGALMQPEAIQGETLRYLDTLGVN 120 Query: 147 PQRIIIELTENEPTYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVD 206 PQRIIIELTENEPTYDYA LRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVD Sbjct: 121 PQRIIIELTENEPTYDYAQLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVD 180 Query: 207 MHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISR 266 MHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISR Sbjct: 181 MHFVQGINHDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISR 240 Query: 267 PLPEPPMSIPDDVSKTLRRDKVPLAANKYGPGKRSATVAKLLRETQYVSPEVTNDAAYDM 326 PLPEPP+SI DDV+KTLRRDKVPL A KYGPGK S TV KLLRET+YVSPEV+ND YDM Sbjct: 241 PLPEPPVSISDDVTKTLRRDKVPLDAKKYGPGKHSTTVFKLLRETRYVSPEVSNDTVYDM 300 Query: 327 FVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKRSCAFFMDPNPILTEQDT 386 FVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGK+SCAFFMDPNPILTEQ T Sbjct: 301 FVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYGRELYGKKSCAFFMDPNPILTEQST 360 Query: 387 SLQDLSNLLVQAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLP 446 SLQDLSNLLV AESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLP Sbjct: 361 SLQDLSNLLVHAESHHLSNGFIITDRGQYMGLGTGHDLLREITQMQIDAARHANPLTQLP 420 Query: 447 GNVPINDHIEYLLHSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGRLLQQACDPNL 506 GNVPINDHIEYLL SGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGR+LQQACDP L Sbjct: 421 GNVPINDHIEYLLQSGVEFCICYCDLDQFKPFNDVYGYRKGDDMIQATGRVLQQACDPEL 480 Query: 507 DFVGHIGGDDFLIMFQSEDWEKRCRTMLDNFTAETRGLYYDEDVQRGGYFTEDRQGNRIF 566 DF+GHIGGDDFLI+FQSEDWEKRCR+MLDNF AETRG YYDEDV+RGGY+TEDRQGNR+F Sbjct: 481 DFIGHIGGDDFLILFQSEDWEKRCRSMLDNFDAETRGFYYDEDVERGGYYTEDRQGNRVF 540 Query: 567 HPLVSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKIQGNSLFIERRIPATFSWALKDG 626 H LVSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKI GNSLFIERRIPATFSWALKD Sbjct: 541 HKLVSVSLGAVKIEPSQYSSPHQIASAATRAKKQAKKIPGNSLFIERRIPATFSWALKDA 600 >gi|300309883|ref|YP_003773975.1| GGDEF domain/EAL domain signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 650 Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 111/241 (46%), Gaps = 8/241 (3%) Query: 44 QRKLSALFQPIVRMRNGEILGYEGLIRGPSNTP-LHSPLSLFKVARTHNLSVQMEYLCRH 102 +R+LS FQPIVR+ +G+++ +E L R S SP+ A + Q+ + Sbjct: 407 ERELSVFFQPIVRLDDGQVIAFEALARWHSTVKGAVSPVEFIPAAERMGIINQLSVILLR 466 Query: 103 IVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRIIIELTENEPTYD 162 L A Q L N+S + E + E ++ + + G P R+ +E+TE D Sbjct: 467 KALAAAASWPAQIRLSFNLSANDINSSEGM-AEIIKLIRESGFCPSRLDLEITETALLQD 525 Query: 163 YALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQF 222 R R +G I +DD G G++SL L +K+D FV I D + L+ Sbjct: 526 LEKTRQLIHSLRQLGCGITLDDFGTGYASLSHLHALPLTRIKIDKSFVADIGQDAVSLKI 585 Query: 223 VRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLPEPPMSIPDDVSKT 282 V+S+ + + EG+E+ L +R+LG GQGY +RP+ DDV+ Sbjct: 586 VKSLLALTLDMDLACVVEGLETPQHLAVLRELGAMYGQGYLYARPMA------ADDVAPW 639 Query: 283 L 283 L Sbjct: 640 L 640 >gi|300313035|ref|YP_003777127.1| serine phosphatase, regulator of sigma subunit [Herbaspirillum seropedicae SmR1] Length = 422 Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 48/136 (35%), Positives = 80/136 (58%) Query: 303 TVAKLLRETQYVSPEVTNDAAYDMFVNDPQLQALPVVSNGLPIGLINRYSMVERFARLYG 362 T L + V + N A ++F +L +LPVV PIGLI+R+ + + ++ Y Sbjct: 19 TAGALAVQVPVVQFDQNNAAVLEIFDQHKELVSLPVVEQQRPIGLISRHIFMSQMSKPYH 78 Query: 363 RELYGKRSCAFFMDPNPILTEQDTSLQDLSNLLVQAESHHLSNGFIITDRGQYMGLGTGH 422 RELY ++SC FMD +P++ + DT ++ L L V + L++GF+I ++GQ GLG+G Sbjct: 79 RELYERKSCIAFMDKDPLIVDADTPIETLGALAVASGDKTLADGFMIVEQGQLNGLGSGL 138 Query: 423 DLLREITQMQIDAARH 438 L+RE+ +Q++ R Sbjct: 139 ALMRELVDLQVEKNRQ 154 >gi|300311038|ref|YP_003775130.1| hypothetical protein Hsero_1709 [Herbaspirillum seropedicae SmR1] Length = 598 Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 9/225 (4%) Query: 51 FQPIVRMRNGEILGYEGLIRGPSNTPLHS--PLSLF--KVARTHNLSVQMEYLCRHIV-- 104 FQP VR+R+G +G E LIR + P+H P +F +T + ++ R +V Sbjct: 365 FQPKVRLRDGACVGVEALIRW--HHPIHGNIPPDVFIPLAEKTGQIRQVTAWVLRQVVAQ 422 Query: 105 LTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRIIIELTENEPTYDYA 164 + R+ + G + N S E ++ + L+ V P I IE TE+ Sbjct: 423 VARWLKSGRALPVAFNASARDFDSDE-LRELLAQQLKLHKVPPALIEIEFTEHAMANHPQ 481 Query: 165 LLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGINHDPMKLQFVR 224 +R R++G ++AIDD G GFS+L + + +K+D F+ + D V Sbjct: 482 QVRQRVQALRELGVKVAIDDFGAGFSNLSYLKNIPADTMKIDRSFIHRLLDDEADQLIVP 541 Query: 225 SIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLP 269 SI +A G V+AEG+ES+ +R LG GQGY I+RP+P Sbjct: 542 SILHLAHNLGFSVVAEGLESERTATLLRHLGCDYGQGYAIARPMP 586 >gi|300312012|ref|YP_003776104.1| phosphodiesterase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 797 Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 29/235 (12%) Query: 51 FQPIVRMRNGEILGYEGLIR---------GPSN-------TPLHSPLSLFKVARTHNLSV 94 QP + + +G+++G E L+R GP N T L+L+ + + LS Sbjct: 551 LQPKLELCSGQVVGAEALVRWIHPEKGFIGPDNFIPFAETTGFIRMLTLWMMEQVARLSE 610 Query: 95 QMEYLCRHIVLTRFAQLGLQGNLFLNVSPGALMQPEAIQGETLRYLEKLGVNPQRIIIEL 154 Q++ Q G+Q +N+S L+ E + L++ + P + +E+ Sbjct: 611 QLQ------------QQGVQLKFSVNLSTRDLLDQE-LPTAFAAILQRHRLQPAALCLEI 657 Query: 155 TENEPTYDYALLRNAAMHYRDMGFQIAIDDLGEGFSSLRLWSELQPEYVKVDMHFVQGIN 214 TE+ D A +N +MGF ++IDD G G+SSL L + +K+D FV + Sbjct: 658 TESAIMDDPARAQNTLERLSNMGFALSIDDFGTGYSSLAYLKRLPVDELKIDKSFVMKMA 717 Query: 215 HDPMKLQFVRSIQEIAEKSGSIVIAEGIESQAELLTIRDLGIACGQGYHISRPLP 269 D + VRS ++ G V+AEG+ES+ +R +G GQGY + +P+P Sbjct: 718 QDQDDAKIVRSTVDLGHNLGLRVVAEGVESEEVWFLLRQMGCDQGQGYFMGKPMP 772 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,023,698 Number of extensions: 87155 Number of successful extensions: 291 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 285 Number of HSP's successfully gapped: 19 Length of query: 630 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 539 Effective length of database: 1,188,985 Effective search space: 640862915 Effective search space used: 640862915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)