BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1776.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311232|ref|YP_003775324.1| threonyl/alanyl tRNA synthetase...   333   5e-93

>gi|300311232|ref|YP_003775324.1| threonyl/alanyl tRNA synthetase
           SAD protein [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  333 bits (855), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 161/212 (75%), Positives = 180/212 (84%), Gaps = 1/212 (0%)

Query: 1   MTERLYLTQPALCADIEILSCAPLEDGRHAVRLSATPFHPQGGGQPSDVGWLGEVEVLRV 60
           MTERLYLT  AL ADI +L C P EDGR+A+RLSATPFHPQGGGQPSD GW+ EVEVLRV
Sbjct: 1   MTERLYLTDRALRADIHVLDCTPQEDGRYAIRLSATPFHPQGGGQPSDTGWIAEVEVLRV 60

Query: 61  VSEGDDILHYTNAAVAPGPAVARVDAQPRQLHTRLHSAGHVIGHVMAQLGWKPTKAHHWP 120
           +SE D ++HYT A VAPGPAVA VDAQPRQLH RLHSAGHVIG VM +LGW PTKAHHWP
Sbjct: 61  LSESDGVVHYTTAPVAPGPAVALVDAQPRQLHARLHSAGHVIGQVMTELGWTPTKAHHWP 120

Query: 121 GEGRVVGVSVGVGGEAAQELEAEEIERRCNALLAQDLACVLSLEAGLRKIGFGDLPAYPC 180
           GE RVVGV+      AAQEL   E+ERRCNALLAQDL CV++++ GLR+IGFGDLPAYPC
Sbjct: 121 GEARVVGVAAPTEA-AAQELAPAELERRCNALLAQDLPCVMAMQDGLRQIGFGDLPAYPC 179

Query: 181 GGTHVATLGEIGKIGIESVRVKKGEVSIRYDV 212
           GGTHVA LGEIG+I I+SVR+KKGEVS+RYDV
Sbjct: 180 GGTHVAALGEIGQIRIQSVRIKKGEVSVRYDV 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 602,895
Number of extensions: 21147
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)