BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1770.p (780 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb... 1446 0.0 gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ... 714 0.0 >gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 780 Score = 1446 bits (3744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 751/780 (96%), Positives = 766/780 (98%) Query: 1 MSKTSQAHIRTTKTPAPPMPNRLVRLLSEARWLALLALLAYLALILLSYSKTDPGWSVAS 60 MSKTSQAHIR TK PAPPMP+RLVRLLSEARWLAL ALL YL LILLSYSKTDPGWSVAS Sbjct: 1 MSKTSQAHIRNTKAPAPPMPSRLVRLLSEARWLALSALLVYLVLILLSYSKTDPGWSVAS 60 Query: 61 AVPRVGNWGGRVGAWTADLMLYIFGLSAWWWCVLVGRSVWTGYRRLSNRFLVAQPVEPEH 120 +VPRVGNWGGRVGAW ADLMLYIFGLSAWWWCVL RSVWTGYRRLSNRFLVAQPVEPEH Sbjct: 61 SVPRVGNWGGRVGAWMADLMLYIFGLSAWWWCVLAARSVWTGYRRLSNRFLVAQPVEPEH 120 Query: 121 QQEPLIRAVGFVFMLTGSMGIEFTRMHRFAPKLPHSSGGVLGEMIGTAMQPTFGFTGSTL 180 QQEPLIRAVGFVFMLTGSMGIEFTRMHRFAPKLPHSSGGVLGEMIG+A+QPTFGFTGSTL Sbjct: 121 QQEPLIRAVGFVFMLTGSMGIEFTRMHRFAPKLPHSSGGVLGEMIGSAVQPTFGFTGSTL 180 Query: 181 LLLLLFGLGFSLLFQVSWLAAVERIGGLIEDGLFAVRDFFAARADRRAGQEAAVKREETV 240 LLL+LFGLGFSLLF VSWLAAVERIGGLIEDGLF VRDFFAARADR+AGQEAAVKREETV Sbjct: 181 LLLMLFGLGFSLLFHVSWLAAVERIGGLIEDGLFWVRDFFAARADRKAGQEAAVKREETV 240 Query: 241 VQERAKIVEAPPIRIEPQIVEVQKSDRVQKEKQTSLFDDLNSELPPLSLLDEAPPAQQTV 300 VQERAKIVEAPPIRIEPQIVEVQKSDRVQKEKQTSLFDD++++LPPLSLLDEAPP+QQTV Sbjct: 241 VQERAKIVEAPPIRIEPQIVEVQKSDRVQKEKQTSLFDDVSTDLPPLSLLDEAPPSQQTV 300 Query: 301 SVETLEFTSRLIEKKLADFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARS 360 SVETLEFTSRLIEKKL+DFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARS Sbjct: 301 SVETLEFTSRLIEKKLSDFGVEVKVVAAYPGPVITRYEIEPATGVKGSQIVNLARDLARS 360 Query: 361 LSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNP 420 LSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNP Sbjct: 361 LSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSKVYNDSHSSLTVALGKDIAGNP 420 Query: 421 VVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSSPRQVRLILIDPKMLELSIYEGIP 480 VVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKS+PRQVRLILIDPKMLELSIYEGIP Sbjct: 421 VVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSTPRQVRLILIDPKMLELSIYEGIP 480 Query: 481 HLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAGYNQKIADADKRGEKIPNPF 540 HLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAGYNQKIADA+KRGEKIPNPF Sbjct: 481 HLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAGYNQKIADAEKRGEKIPNPF 540 Query: 541 SLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPS 600 SLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPS Sbjct: 541 SLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQKARAAGIHLILATQRPS 600 Query: 601 VDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHGA 660 VDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHGA Sbjct: 601 VDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLLGMGDMLYNPPGTGLPVRVHGA 660 Query: 661 FVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDAEGGGGSGAAAGAGGGEGDEMYDQAV 720 FVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDA+GGG AA GAGGGEGDEMYDQAV Sbjct: 661 FVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDADGGGSGAAAGGAGGGEGDEMYDQAV 720 Query: 721 AVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGASDAAE 780 AVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGASDAAE Sbjct: 721 AVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQSNGNREILVPAGASDAAE 780 >gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein [Herbaspirillum seropedicae SmR1] Length = 524 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/490 (73%), Positives = 412/490 (84%), Gaps = 3/490 (0%) Query: 284 LPPLSLLDEAPPAQQTVSVETLEFTSRLIEKKLADFGVEVKVVAAYPGPVITRYEIEPAT 343 LP L LLDE P ++ V E L+ T RLIE++L +F V V V+ A GPVITR+E+EPA Sbjct: 30 LPSLDLLDEVPESRIEVDTEQLQETGRLIEQRLKEFKVPVTVLGAEAGPVITRFEVEPAQ 89 Query: 344 GVKGSQIVNLARDLARSLSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSKVYND 403 GV+G+Q+VNL +DL+R+L LTSIRVVE I GK MGLELPN +RQ+++L+EI+ S+ Y Sbjct: 90 GVRGAQVVNLMKDLSRALGLTSIRVVETIPGKTCMGLELPNARRQMIKLSEIVHSQAYRK 149 Query: 404 SHSSLTVALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSSPRQVRL 463 S S LT+A+GKDI G PVV DLA+ PH+LVAGTTGSGKSV INA ILSLLYK++P +VRL Sbjct: 150 SASHLTIAMGKDITGTPVVTDLARAPHMLVAGTTGSGKSVAINAMILSLLYKATPEEVRL 209 Query: 464 ILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNLAGYN 523 I+IDPKMLELSIYEGIPHLLAPVVTDMR+A HALNWAV+EMERRYKKMSKLGVRNLAGYN Sbjct: 210 IMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVDEMERRYKKMSKLGVRNLAGYN 269 Query: 524 QKIADADKRGEKIPNPFSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIARIAQ 583 QK+ +A RGEKIPNPFSLTPDAPEPLE+L TIVI+IDELADLMMVVGKKVEELIAR+AQ Sbjct: 270 QKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVIVIDELADLMMVVGKKVEELIARLAQ 329 Query: 584 KARAAGIHLILATQRPSVDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLLGMGD 643 KARAAGIHLILATQRPSVDVITGLIKAN+PTR+AFQVSSKIDSRT+LDQMGAE+LLG GD Sbjct: 330 KARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSRTVLDQMGAESLLGHGD 389 Query: 644 MLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDAEGGGGSGA 703 ML+ PPG+G P RVHGAFVSD+EVHRVVE+LKS GEP YIE IL + ED Sbjct: 390 MLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEILAPPISEDT--AQADMF 447 Query: 704 AAGAGGG-EGDEMYDQAVAVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVSTMQ 762 A G GG E D +YD+AVA VLK RRASIS VQR LRIGYNRAARL+EQME +G++S M Sbjct: 448 ANGEGGDPEADPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAARLVEQMETAGVLSAMS 507 Query: 763 SNGNREILVP 772 NG+R+ILVP Sbjct: 508 RNGSRDILVP 517 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,156,917 Number of extensions: 85945 Number of successful extensions: 352 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 350 Number of HSP's successfully gapped: 2 Length of query: 780 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 687 Effective length of database: 1,179,515 Effective search space: 810326805 Effective search space used: 810326805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)