BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1769.p (317 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoredu... 629 0.0 gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase s... 140 1e-34 gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoredu... 63 3e-11 >gi|300311227|ref|YP_003775319.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 629 bits (1623), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/316 (96%), Positives = 310/316 (98%) Query: 2 STPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQ 61 +TPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQ Sbjct: 3 TTPKHAKVLILGSGPAGYSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQ 62 Query: 62 GPELMQRLQQHAERFNTEIIFDHIHTTKLSERPFRLIGDNGEYTADALIIATGASAQYLG 121 GPELMQRL QHAERF TEIIFDHIHTTKLSERPFRLIGD+GEYTADALIIATGASAQYLG Sbjct: 63 GPELMQRLLQHAERFKTEIIFDHIHTTKLSERPFRLIGDSGEYTADALIIATGASAQYLG 122 Query: 122 LPSEQAFMGRGVSACATCDGFFYRGKEVAVIGGGNTAVEEALYLSNIASKVTIVHRRDKF 181 LPSEQAFMGRGVSACATCDGFFYRGKEVAV+GGGNTAVEEALYLSNIASKVTI+HRRDKF Sbjct: 123 LPSEQAFMGRGVSACATCDGFFYRGKEVAVVGGGNTAVEEALYLSNIASKVTIIHRRDKF 182 Query: 182 RAEPILIDRLLHKVSEGKIAIQWHSTLDEVVGDDSGVTGIKIKSTQDGAITDIPVHGLFV 241 RAEPILIDRLLHKVSEGKIAIQWH TLDEVVGDDSGVTGIKIKSTQD AIT+IPVHGLF+ Sbjct: 183 RAEPILIDRLLHKVSEGKIAIQWHHTLDEVVGDDSGVTGIKIKSTQDDAITEIPVHGLFI 242 Query: 242 AIGHKPNTSIFEGQLEMHNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSAGT 301 AIGHKPNTSIFEGQL M NGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSAGT Sbjct: 243 AIGHKPNTSIFEGQLSMQNGYLKTRTGTEGFATATSIDGVFAAGDVQDHVYRQAITSAGT 302 Query: 302 GCMAALDAQRYLEGLE 317 GCMAALDAQRYLEGLE Sbjct: 303 GCMAALDAQRYLEGLE 318 >gi|300313594|ref|YP_003777686.1| alkyl hydroperoxide reductase subunit F [Herbaspirillum seropedicae SmR1] Length = 533 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/281 (33%), Positives = 148/281 (52%), Gaps = 22/281 (7%) Query: 41 GGQLMTTTDVENWPGDPLGVQ---GPELMQRLQQHAERFNTEIIFDH-----IHTTKLSE 92 GGQ++ T +EN+ + VQ GP+ L+QH + ++ +I+ + KL E Sbjct: 248 GGQVLDTLAIENF----ISVQETEGPQFATALEQHVKAYDVDIMNVQRAEALVPGDKLIE 303 Query: 93 RPFRLIGDNGEYTADALIIATGASAQYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVI 152 + + G +I++TGA + + +P EQ + +GV+ C CDG ++GK V+VI Sbjct: 304 VK---LANGGVLKGKTVILSTGARWRNVNVPGEQEYKNKGVAYCPHCDGPLFKGKRVSVI 360 Query: 153 GGGNTAVEEALYLSNIASKVTIVHRRDKFRAEPILIDRLLHKVSEGKIAIQWHSTLDEVV 212 GGGN+ VE A+ L+ I + VT++ + +A+ +L+ +L S + I + E+ Sbjct: 361 GGGNSGVEAAIDLAGIVAHVTLIEFAAELKADAVLVRKLK---SLPNVTIVTSAQTTEIT 417 Query: 213 GDDSGVTGIKIKSTQDGAITDIPVHGLFVAIGHKPNTSIFEGQLEMHNGYLKTRTGTEGF 272 GD V GI K + G I +P+ G+FV IG PNT +G L + + + +G Sbjct: 418 GDGQRVNGISYKERETGEIKHVPLEGVFVQIGLVPNTEWLKGTLALSK-HGEIEIDAKG- 475 Query: 273 ATATSIDGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRYL 313 TSI GVFAAGDV Y+Q + + G G AAL A +L Sbjct: 476 --QTSIPGVFAAGDVTTVPYKQIVIAVGAGATAALSAFDHL 514 >gi|300310953|ref|YP_003775045.1| thioredoxin reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 357 Score = 62.8 bits (151), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 78/315 (24%), Positives = 136/315 (43%), Gaps = 38/315 (12%) Query: 7 AKVLILGSGPAG----YSAAVYAARANLNPVLITGVEQGGQLMTTTDVENWPGDPLGVQG 62 A +I+G+GP G + + +A++ L Q +L + + P P+ G Sbjct: 16 ADAVIIGAGPVGLFQVFELGLLEIKAHVIDSLPVVGGQCVELYPDKPIYDIPAVPV-CTG 74 Query: 63 PELMQRLQQHAERFNTEIIFDHIHTTKLSERP---FRLIGDNG-EYTADALIIATGASA- 117 EL L + E F+ T +++R F + G ++ + IA G + Sbjct: 75 QELTDNLLKQIEPFSPTFHLGQ-EVTLVNKREDGRFDVETSTGTKFITKTIFIAAGVGSF 133 Query: 118 --QYLGLPSEQAFMGRGVSACATCDGFFYRGKEVAVIGGGNTAVEEALYLSNIASKVTIV 175 + L + + F G V D + GK + + GGG++A++ AL A V ++ Sbjct: 134 QPRTLKVEGIEQFEGSQVFYRVK-DPALFEGKNIVICGGGDSALDWALNFVGKAESVILL 192 Query: 176 HRRDKFRAEPILIDRLLHKVSEGKIAIQWHSTLDEVVGDDSGVTGIKIKSTQ-------- 227 HRR++FRA P + ++ ++ Q+ L ++G VTG +IK + Sbjct: 193 HRREEFRAAPASVAKM------KELCEQYEMQL--LIGQ---VTGTEIKDGKLAEVKVTG 241 Query: 228 -DGAITDIPVHGLFVAIGHKPNT-SIFEGQLEMHNGYLKTRTGTEGFATATSIDGVFAAG 285 DG +P+ L V G P I E LE+ LK TE F T++ G+FA G Sbjct: 242 ADGVTRRLPLDMLLVFFGLSPKLGPIAEWGLEIERKQLKV-MDTEKF--ETNVPGIFAVG 298 Query: 286 DVQDHVYRQAITSAG 300 D+ + ++ + +G Sbjct: 299 DINTYPGKKKLILSG 313 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 976,312 Number of extensions: 41446 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 152 Number of HSP's successfully gapped: 3 Length of query: 317 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 232 Effective length of database: 1,217,395 Effective search space: 282435640 Effective search space used: 282435640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)