BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1765.p
         (421 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311224|ref|YP_003775316.1| DNA repair photolyase [Herbaspi...   726   0.0  

>gi|300311224|ref|YP_003775316.1| DNA repair photolyase
           [Herbaspirillum seropedicae SmR1]
          Length = 417

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/421 (86%), Positives = 382/421 (90%), Gaps = 4/421 (0%)

Query: 1   VASFPKFPQGIARPFPIQPEPSGADDATLTPESYLHRPQVAQKGRGAVTNLRGRYESVSR 60
           +ASFPKFPQGIA+PFP QP P+  DD TLTP +++HR QVAQKGRGAVTNLRGRYESVSR
Sbjct: 1   MASFPKFPQGIAQPFPTQPAPTAEDDPTLTPATFIHRSQVAQKGRGAVTNLRGRYESVSR 60

Query: 61  EEFDDGWQAVRFAEAGPLAAEGMEEDEPPRLKTSVTEEEAKSIISRNSSPDLPFSLSLNP 120
           EEFDDGWQ +R+AE G  AA   +++EP RLKT VTEE AKSIISRN+SPDLPFSLSLNP
Sbjct: 61  EEFDDGWQPMRWAE-GEGAAALEQDEEPARLKTIVTEETAKSIISRNTSPDLPFSLSLNP 119

Query: 121 YRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELARSSYQPDTITVGI 180
           YRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELA+ SYQPDTITVGI
Sbjct: 120 YRGCEHGCIYCFARPSHSYLGLSPGLDFESRLVAKTNAPELLLRELAKPSYQPDTITVGI 179

Query: 181 NTDAYQPIERERGLTRRILQILHDCENPVALITKSALIERDIDLLAPMAAKGQAIAAVTI 240
           NTDAYQPIERER LTRRILQILHDCENPVA+ITKSALIERDIDLLA MAAK QAI AVTI
Sbjct: 180 NTDAYQPIERERQLTRRILQILHDCENPVAMITKSALIERDIDLLAAMAAKDQAIVAVTI 239

Query: 241 TTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVE 300
           TTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVE
Sbjct: 240 TTLDPAIARTLEPRAASPARRLRVIRTLAEAGIPVSVSIAPVIPFVTEPDLERVMEAAVE 299

Query: 301 AGAGQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDANFTTRMRGT 360
           AGA QAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDA+F TRMRGT
Sbjct: 300 AGARQAGYIVLRLPWEVSPLFRQWLQAHFPDRAARVMNRIQDMRGGKDYDADFATRMRGT 359

Query: 361 GVWADLLHQRFEKASRRLGIDHRNRAFATLDASRFRRPVVVPPLPQAGRGDQGSGGQLDL 420
           GVWADLL QRFEKASRRLGI HRNRAFATLDAS F+RP      PQA R    S GQ+DL
Sbjct: 360 GVWADLLQQRFEKASRRLGIHHRNRAFATLDASCFKRPQWA---PQAPRQPARSDGQMDL 416

Query: 421 F 421
           F
Sbjct: 417 F 417


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,325,772
Number of extensions: 53924
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,203,190
Effective search space: 400662270
Effective search space used: 400662270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)