BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1759.p
         (399 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311218|ref|YP_003775310.1| hypothetical protein Hsero_1893...   738   0.0  

>gi|300311218|ref|YP_003775310.1| hypothetical protein Hsero_1893
           [Herbaspirillum seropedicae SmR1]
          Length = 399

 Score =  738 bits (1904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/399 (88%), Positives = 374/399 (93%)

Query: 1   MPVPAWPWATPSNAGHSQSMDYRTRIVSSLTEIGQQRWDALVAAQAEGNPFLSYAFLHAL 60
           MPV A PWA PS AGHSQSMDYRTRIVSSL EIGQ RWDALVA Q EGNPFLSYAFLHAL
Sbjct: 1   MPVRAGPWAAPSFAGHSQSMDYRTRIVSSLAEIGQARWDALVATQEEGNPFLSYAFLHAL 60

Query: 61  HESGAASADTGWEPHYLTLWQAESLVAALPLYRKFHSYGEYVFDWAWAEAYQRHGVDYYP 120
           HESG+ASA++GWEPHYLTLWQ ESL AALPLYRKFHSYGEYVFDWAWAEAYQRHGV+YYP
Sbjct: 61  HESGSASAESGWEPHYLTLWQDESLAAALPLYRKFHSYGEYVFDWAWAEAYQRHGVEYYP 120

Query: 121 KLLSAIPFTPVRGARLMAVDDTARGALVAALRALQERNEVSSTHILYPPPEQAQQLADAG 180
           KLLSAIPFTPVRGARLMA+D+TAR AL+ AL+ LQ++ + SSTHILYPP +QA QLA+AG
Sbjct: 121 KLLSAIPFTPVRGARLMAIDETARVALLEALQRLQQQGQHSSTHILYPPEQQAGQLAEAG 180

Query: 181 FLLRSGVQFHWRNEGYGSFSEFVDTLDRKKRKNILAERRKVAEQGVHFVWLRGAEITEAH 240
           FLLRSGVQFHW NEGYGSF++FVDTLDRKKRKNILAERRKVAEQGV FVWLRGAEIT+AH
Sbjct: 181 FLLRSGVQFHWHNEGYGSFADFVDTLDRKKRKNILAERRKVAEQGVRFVWLRGAEITDAH 240

Query: 241 WRFFNRCYRHTYAAHYSTPYLNLDFFGRIGDTMPQHLLLTVALRGEEPIASSLTVHDDDT 300
           WRFFNRCYRHTYAAHYSTPYLNLDFF RIG TMPQHLLLT+ALRGEEPIASSLTVHD DT
Sbjct: 241 WRFFNRCYRHTYAAHYSTPYLNLDFFRRIGATMPQHLLLTLALRGEEPIASSLTVHDADT 300

Query: 301 LYGRYWGALEHVPCLHFETAYYQPLEFCIAEKITWFEGGAQGEHKMARGFLPQKTWSAHW 360
           LYGRYWGALEHVPCLHFETAYYQPLEFCIAEKI+WFEGGAQGEHKMARGFLPQKTWSAHW
Sbjct: 301 LYGRYWGALEHVPCLHFETAYYQPLEFCIAEKISWFEGGAQGEHKMARGFLPQKTWSAHW 360

Query: 361 LAHPGFYDAVEHFLAREGGGIDGYISELNERNPFRDPPR 399
           LAHPGFYDAVEHFL+RE  GIDGYISELNE NPFRDPPR
Sbjct: 361 LAHPGFYDAVEHFLSRESNGIDGYISELNEHNPFRDPPR 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,386,182
Number of extensions: 59386
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,207,925
Effective search space: 376872600
Effective search space used: 376872600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)