BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1756.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane...   409   e-115
gi|300313950|ref|YP_003778042.1| methyltransferase [Herbaspirill...    67   1e-12

>gi|300311215|ref|YP_003775307.1| methyltransferase transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  409 bits (1051), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/254 (90%), Positives = 242/254 (95%)

Query: 1   MPGILYLVPNTLGSTELPTDTDAAHPLEAIIPRQVQAIAARLDYFVAENAKTTRAFLKLL 60
           MPGILYLVPNTLGSTEL T+   AHPLEAIIPRQVQ I A LDYFVAENAK+TRAFLKLL
Sbjct: 1   MPGILYLVPNTLGSTELSTEPGDAHPLEAIIPRQVQVITAGLDYFVAENAKSTRAFLKLL 60

Query: 61  GSNTPLTKPIQEIQISELNVNTPATALPALLAPLLAGRDGGLISEAGVPAVADPGANLVR 120
           GS+  L +PIQEI+ISELNVNTPA ALPALLAPLLAGRDGGLISEAGVPAVADPGANLVR
Sbjct: 61  GSSQALARPIQEIEISELNVNTPAAALPALLAPLLAGRDGGLISEAGVPAVADPGANLVR 120

Query: 121 LAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNGYLPTDAEARAKRIRQLEDRSRKEK 180
           LAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNGYLPTDAEAR+KRIRQLEDRSRKEK
Sbjct: 121 LAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNGYLPTDAEARSKRIRQLEDRSRKEK 180

Query: 181 QTQLLIETPYRNGAMLEALAQACQPGTLICVATDLSLPSESVRTQTAAQWKAALAAHKAP 240
           QTQLLIETPYRNGAML+ALAQ+CQPGTLICVATDLSLP+E+VRTQTAAQW+AALAA +AP
Sbjct: 181 QTQLLIETPYRNGAMLDALAQSCQPGTLICVATDLSLPTETVRTQTAAQWQAALAARQAP 240

Query: 241 DFHKKPTVFLLLAE 254
           DFHKKPTVFLLLA+
Sbjct: 241 DFHKKPTVFLLLAD 254


>gi|300313950|ref|YP_003778042.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 311

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 17/212 (8%)

Query: 43  DYFVAENAKTTRAFLKLLGSNTPLTKPIQEIQISELNVNTPATALPALLAPLLAGRDGGL 102
           D    E+ + T   L+  G + PL      +   E N    A  +   +  L AG+   L
Sbjct: 50  DAVACEDTRNTSQLLQRYGLSRPL------LATHEHNEREAAAKI---IERLHAGQRVAL 100

Query: 103 ISEAGVPAVADPGANLVRLAHQHGIQVRPLVGPSSLLLAVMASGLNGQSFAFNGYLPTDA 162
           +S+AG PAV+DPGA +V      G++V PL G S+ + A+ ASGL  + F F G+LP   
Sbjct: 101 VSDAGTPAVSDPGARVVDAVRAAGLRVIPLPGASAAITALSASGLTDERFHFVGFLPAKT 160

Query: 163 EARAKRIRQLEDRSRKEKQTQLLIETPYRNGAMLEALAQACQPGTLICVATDLSLPSESV 222
             R   +++L +         +  E P+R    +++L Q   P   + +A +L+   E +
Sbjct: 161 RQRETALQELVEL----PAALVFYEAPHRIVETVQSLLQVFGPQRQVVLARELTKLFEDI 216

Query: 223 RTQTAAQWKAALAAHKAPDFHKKPTVFLLLAE 254
              +  +    L    A D +++   F++L E
Sbjct: 217 HRCSLGEAPDWL----AQDANRQRGEFVILVE 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 689,478
Number of extensions: 24953
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)