BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1755.p
         (348 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311214|ref|YP_003775306.1| periplasmic serine protease [He...   631   0.0  

>gi|300311214|ref|YP_003775306.1| periplasmic serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  631 bits (1628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/348 (89%), Positives = 330/348 (94%), Gaps = 5/348 (1%)

Query: 1   MSNNESENQQAQPPQSSASPASAPPPSSIPASVREDKKSGWERDVLEKLALFAVKEQRAR 60
           MSNNESE+ ++QP   S  PA   P SSIPASVR+DKKSGWERDVLEKLALFAVKEQRAR
Sbjct: 1   MSNNESEHPESQP--QSTPPA---PSSSIPASVRDDKKSGWERDVLEKLALFAVKEQRAR 55

Query: 61  RRWGIFFRIAILAVIVMGGWLAFTYNKIESEPLGPHTALVEIKGAIDSEGQGSAAVVIPA 120
           RRWG+FFRIA+LAV+V+G W+AFT+N+IE+EPLGPHTALVEIKGAIDSEGQGSA VVIPA
Sbjct: 56  RRWGVFFRIALLAVVVLGVWMAFTFNRIENEPLGPHTALVEIKGAIDSEGQGSAGVVIPA 115

Query: 121 LDKAFAASDSVGVILKINSPGGSPVQAGMINDEITRLRKEYPKKPIYVVVEEMCASGGYY 180
           LDKAFAA+DSVGVILKINSPGGSPVQAGMINDEITRLRK+YPKKPIYVVVEE+CASGGYY
Sbjct: 116 LDKAFAANDSVGVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGGYY 175

Query: 181 IAVAADKIFVNKASLIGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPK 240
           IA AADKIFVNKASL+GSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPK
Sbjct: 176 IAAAADKIFVNKASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPK 235

Query: 241 QREYALSMLEEIHQQFIEVVRQGRGTRLKETPDTFSGLVWTGSKAVELGLADGFGTVDSV 300
           QREYA SML+EIHQQFIEVVRQGRG RLKETPDTFSGLVWTGSKAVELGLADGFGTVDSV
Sbjct: 236 QREYAQSMLQEIHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLADGFGTVDSV 295

Query: 301 ARDVIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTMMSAPLSQLR 348
           ARD IKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKT+MS+ L QLR
Sbjct: 296 ARDEIKAEDVVDYTQTENLSERVLKKFGVAFGAGFAKTVMSSSLPQLR 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,027,498
Number of extensions: 44827
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,212,660
Effective search space: 317716920
Effective search space used: 317716920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)