BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1754.p
         (124 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin su...   214   2e-57
gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containi...    67   4e-13

>gi|300311213|ref|YP_003775305.1| nitrite reductase ferredoxin
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score =  214 bits (544), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 113/124 (91%)

Query: 1   VTTPEEIFICPASELLERGLGKRFPVRLHGEATTGFVVRHGGVVHGYLNRCAHVPIELDW 60
           +T  + I IC ++EL+E GLGKRFPV++ G+  +GFVVR+GGVV+GYLNRCAH+P+ELDW
Sbjct: 1   MTASDAILICASAELVEGGLGKRFPVQVRGDEASGFVVRYGGVVYGYLNRCAHLPVELDW 60

Query: 61  AEGEFFESSGLYLMCATHGAVYAPDTGKCVGGPCTGAHLRKIMAVERDGQIYWRPDDIVK 120
           AEGEFFESSGLYLMCATHGAVYAPDTGKC GGPCTGAHLRKIM VER+GQ++WRPDD+VK
Sbjct: 61  AEGEFFESSGLYLMCATHGAVYAPDTGKCAGGPCTGAHLRKIMTVEREGQVFWRPDDVVK 120

Query: 121 PVEA 124
           PVEA
Sbjct: 121 PVEA 124


>gi|300310339|ref|YP_003774431.1| Rieske (2Fe-2S) domain-containing
           protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 67.4 bits (163), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 7   IFICPASELLERGLGKRFPVRLHGEATTGFVVRHGGVVHGYLNRCAHVPIELDWAEGEFF 66
           +++C  ++L E G  + F     G+AT  FV+R G  V  + + C H    L W    +F
Sbjct: 1   MYLCHITQLPENG-ARGFDTESAGQATI-FVLRRGDQVRAWRDSCPHHGTPLPWRRDAYF 58

Query: 67  ESSGLYLMCATHGAVYAPDTGKCVGGPCTGAHLRKI-MAVERDGQIY 112
           + +G +L+CA HGA++ P TG C  GPC G  L  + + ++ DG ++
Sbjct: 59  DGTGQHLVCAAHGALFDPLTGVCTLGPCQGDTLTAVPLRIDDDGGLH 105


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.142    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 394,036
Number of extensions: 13558
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 124
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 50
Effective length of database: 1,269,480
Effective search space: 63474000
Effective search space used: 63474000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)