BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1751.p (1075 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbasp... 1460 0.0 gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament ribo... 263 4e-71 >gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1] Length = 1062 Score = 1460 bits (3780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 907/1094 (82%), Positives = 932/1094 (85%), Gaps = 51/1094 (4%) Query: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNY 60 Query: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS Sbjct: 61 GEERHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFIS 120 Query: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ Sbjct: 121 LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPNGMSVIARTAGIGRNVDELQ 180 Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 WDLNYLMQLWRAIEGAGQS SGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ Sbjct: 181 WDLNYLMQLWRAIEGAGQSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV Sbjct: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR Sbjct: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ Sbjct: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH Sbjct: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEKRGEILKIETRHRVTVIMIPNKHLETPH 480 Query: 481 YKMERIKHDDPRLDDAQASYTMAEQADTDIGYSQRQKEEVRPRQEAVVKGITPDQPAPIV 540 YKMERIKHDDPRLDDAQASYTMAEQADTDIGYS+RQKE+VRPRQEAVVKGITPDQPAPIV Sbjct: 481 YKMERIKHDDPRLDDAQASYTMAEQADTDIGYSKRQKEDVRPRQEAVVKGITPDQPAPIV 540 Query: 541 ERKAPEPVAAAVPPPTLAPESGLLGKIFAFFRKKPVAPVEAPAAVEAKAPAKREGERGGR 600 ERKAPEPVAA VPPPTLAPESGLLGKIF+FFRKKPVAPV APA VEAKAPAKREGE R Sbjct: 541 ERKAPEPVAAPVPPPTLAPESGLLGKIFSFFRKKPVAPVAAPAPVEAKAPAKREGE---R 597 Query: 601 GGERNGRNRNRGERTERGERAERGERGERNGEQRAARGPAAVELKTGEAAEAKQARPPRG 660 G RN R ERG+RAERGER ERNGEQR R PAA ELK G+AAE KQ R PR Sbjct: 598 NGRGGDRNGRNRNRNERGDRAERGERAERNGEQRNGRNPAAAELKAGDAAEGKQVRAPRP 657 Query: 661 PREPKEGREPRE-------AREGQEPKEARRNETREPREPREPREAREGREVREGREPRT 713 PREPKEGREPRE AR+GQE KE RRN EPRE REPRE REGRE REGREPR Sbjct: 658 PREPKEGREPREPRELQAQARDGQEVKETRRN---EPREAREPREGREGREPREGREPRA 714 Query: 714 PREPREPRAPRGERNPAKTEEGLPLEVAL---AAGAATAGVAVALTNDEQAAQVDAAQVE 770 PRAPRGER AK+EEGLPLE AL AG A A + +DE A QV+AAQVE Sbjct: 715 ------PRAPRGERKEAKSEEGLPLEAALAAGTAGVAVAAGTAVIASDEAATQVEAAQVE 768 Query: 771 GAEGVEGVETAEGGSEPRRRRRRGGRNRHRRERDENGNLIENAE-GDAAEANDQAEAGET 829 E EG ETAEG +EPRRRRRRGGRNRHRRERDENGNLI+NAE GD+AE + A Sbjct: 769 AGEAGEGAETAEGATEPRRRRRRGGRNRHRRERDENGNLIDNAEAGDSAEGDAAETAEGA 828 Query: 830 PQSVVVASAAAETVITATPAAPVEVAQAAVAQASFSASPVPQPSQEPTPAAPVNVQAEAA 889 ++ A+ + QAAVAQASF+ASPVP P AE+A Sbjct: 829 EAAIPAFVPVADAAAASA--------QAAVAQASFAASPVPAAEDAPV--------AESA 872 Query: 890 AQVESGVNSVEAVAAAAAEATEAVFSHQQAIEPPAPSIDASFAPTPAFEPVQAAVAAPAA 949 A+VESGVNSVEAVAAAAAEATEAVFSHQ AIEP APSIDASFAP P VQA APAA Sbjct: 873 AKVESGVNSVEAVAAAAAEATEAVFSHQPAIEPVAPSIDASFAPAPVEAAVQAPAQAPAA 932 Query: 950 SEAPVEVVTAPAPVVP--------QQISLLDAVEASPAVVAEASAPVAPAPVVAAPAAPA 1001 SEAPVEVV A QQISLLDAVEA+P V + +A AAPA A Sbjct: 933 SEAPVEVVPVVAAEPVAAPAPVVQQQISLLDAVEAAPVVASAPAA----PAAPAAPAPQA 988 Query: 1002 AATPPAAAGNGAQWDSLQQMLSHAGLTLATTDPVKLRAAQEAAAAIVPAPRVPRERKPLP 1061 A P AAGNGAQWDSLQQMLS AGLTLATTDPVKLRAAQEAAAA VPAPRVPRERKPLP Sbjct: 989 APAPAQAAGNGAQWDSLQQMLSQAGLTLATTDPVKLRAAQEAAAAFVPAPRVPRERKPLP 1048 Query: 1062 PQSSEPLVQVETRR 1075 PQS+EPLVQVETRR Sbjct: 1049 PQSTEPLVQVETRR 1062 >gi|300312859|ref|YP_003776951.1| cytoplasmic axial filament ribonuclease G protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 158/453 (34%), Positives = 252/453 (55%), Gaps = 6/453 (1%) Query: 4 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 63 +L N T QE RVA++ + ++ IE T NIY G + R+ P +++ F++ G E Sbjct: 5 ILINITPQET-RVALILQGAVQELHIERTLSRGLAGNIYLGKVVRVLPGMQSAFIDIGLE 63 Query: 64 RHGFLPFKEVARSYFKEGIDVRNASIKEALREGQEIIVQVEKEERGNKGAALTSFISLAG 123 R FL ++ + +G + I++ L +GQ I VQV K+ G KGA L++ IS+AG Sbjct: 64 RAAFLHVADIWEARSHDGQNTPAIPIEKLLHDGQSITVQVIKDPIGTKGARLSTQISIAG 123 Query: 124 RYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLP---NGMSVIARTAGIGRNVDELQ 180 R LV +P + + G+S+R+E E +EL + + LP G +I A + D LQ Sbjct: 124 RMLVYLPQD-KHIGISQRIENEAERELLRSKVQALLPPEEKGGFIIRTMAEDASDAD-LQ 181 Query: 181 WDLNYLMQLWRAIEGAGQSGSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQ 240 D+ YL + W I G++ L++Q+ SL R +RD+ I +D+ + Q Sbjct: 182 MDVEYLRKTWATIVKQGKTNPAPTLLHQDLSLAQRVLRDFVGDHTATIQVDSRENFHMLQ 241 Query: 241 QFMAHVMPDMVHRVKRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV 300 +F A P ++ ++ YR + PLF + +E +IE A R V L SGG +++D TEA+ ++ Sbjct: 242 EFGAIYTPSVLTKLTHYRGERPLFDLYGVEEEIERALGRRVDLKSGGYLIVDQTEAMTTI 301 Query: 301 DVNSARATRGSDIETTAFNTNLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGR 360 DVN+ G + + T F TNLEAA +ARQLRLR+LGG+I++DFIDME++++++ V Sbjct: 302 DVNTGSFVNGRNFDDTIFKTNLEAAHAIARQLRLRNLGGIIILDFIDMESTEHRQAVLAE 361 Query: 361 LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ 420 L AL DR ++ + S GL+E++R+R R SL+ TCP C G G ++ + + Sbjct: 362 LGKALQRDRTKISVSGFSTLGLVEMTRKRTRESLAHILCETCPACKGRGQVKTPRTVCYE 421 Query: 421 VLRIIQEEAMKENSAAIHVQAPVDVAAFLLNEK 453 +LR + EA + N + A V L E+ Sbjct: 422 ILREVMREAKQFNPREFRILASQVVVDMFLEEE 454 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.129 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,906,784 Number of extensions: 68889 Number of successful extensions: 221 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 218 Number of HSP's successfully gapped: 2 Length of query: 1075 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 980 Effective length of database: 1,170,045 Effective search space: 1146644100 Effective search space used: 1146644100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 136 (57.0 bits)